Transcript Information: S_Transcript_44001.p1


Annotated TAIR IDAT5G46560.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:18888061-18890090 | Forward length=387
E-Value8E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0660139671867
Replicate 22.9484833970872
Replicate 32.6346765833715
Condition 2: 8 Hour
Replicate 14.9136844048694
Replicate 24.2269391439115
Replicate 34.1256479235448
Condition 3: 24 Hour
Replicate 12.5166916463818
Replicate 23.3421288960512
Replicate 32.3246123875683


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44001.p1 GENE.S_Transcript_44001~~S_Transcript_44001.p1 ORF type:5prime_partial len:217 (+),score=32.64 S_Transcript_44001:2-652(+)
CTCCCTTTCTCCTTCCCTCCTTCAAAAACCAAAAATAGTGAGAATAGAAACAGTACAGACATGATGAGACCATCTCCATATTCAACACCAAAAAGACGCCCAAAATCAGAACCCAAAACCCCAGATACTAATTCAAAACCCTACAATTACAATAGAGATCAATCTCCTTCTCCCTCAACTTCATCGACGGTGACATCAATATTTGAAAAAGTAGAACCACCCCCTGATTTTTTACCATCCTCACAATCCGAATTTCTCAAGCTTCTTCTCGTACTCGCTATTGCTGCTTTTGTTGCTGCCACCTGTCATTTTCTTGTCGGCATTTTTCATCGCCCAACTTTACCCTTTTGTGACAACATCGGCAATCTCGATTCCGGCGATGCCCTTCTTTCGGCAGAATCCTGTGAGCCTTGTCCAAGTAATGGGAGATGTTATAAGGGCCAGTTGGAGTGCATTCAAGGATATAGAAAGTATGGCAAGATGTGCATTGAAGATGGAGATATCAGTGAAACCGCAAATAAACTTGCAGAATGGGCAAAAGATCATCTATGTGAAGCACATGCACAACACATTTGTCATGGAACTGGAACAATTTGGTTTTGTCACTTGACTGCTGTCACAATTTCAGACTTTGTTCACATGACACCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44001.p1 GENE.S_Transcript_44001~~S_Transcript_44001.p1 ORF type:5prime_partial len:217 (+),score=32.64 S_Transcript_44001:2-652(+)
LPFSFPPSKTKNSENRNSTDMMRPSPYSTPKRRPKSEPKTPDTNSKPYNYNRDQSPSPSTSSTVTSIFEKVEPPPDFLPSSQSEFLKLLLVLAIAAFVAATCHFLVGIFHRPTLPFCDNIGNLDSGDALLSAESCEPCPSNGRCYKGQLECIQGYRKYGKMCIEDGDISETANKLAEWAKDHLCEAHAQHICHGTGTIWFCHLTAVTISDFVHMTP*

Click here to download the sequence:
Link to NCBI Protein BLAST