Transcript Information: S_Transcript_44001.p2


Annotated TAIR IDAT5G46560.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:18888061-18890090 | Forward length=387
E-Value2E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8528038834619
Replicate 22.7927581718373
Replicate 31.6341664884203
Condition 2: 8 Hour
Replicate 12.6994164958396
Replicate 22.2655036597191
Replicate 32.8331189854722
Condition 3: 24 Hour
Replicate 12.2121401003133
Replicate 21.0040929179394
Replicate 31.7559651168119


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44001.p2 GENE.S_Transcript_44001~~S_Transcript_44001.p2 ORF type:complete len:158 (+),score=24.86,MSC|PF09402.6|2.6e-07 S_Transcript_44001:758-1231(+)
ATGTTGGAGAACAATGGGTTGGTTCAGAGTTCAACTTTGGATCATGTGAAAATTCTGTATGTCAAAGAAAGAGCAAGGCAATACCTTGACAAATTGCTCGATATAAGGACAACTAATGATGGGATCAAAGAGTTCAAGTGTCCTGAAATTCTAGCTGACAGTTACAAATCAGTGACCTGTCGTGGCCGACAATGGATAGCCAAACATATTGTCTTCCTCATACCAATTTGTGCTGTGCTTGCAGGATTGACTTTGCTGGTGTTCAGAATTCGTAGAAGATGGTATTTGACAAATAGAGGAGAACAGCTTTACCATCAGGTTTGTGACATACTCGAAGAGAATGCTTTGATGTCTAAAAGCACGATGGACAGAGAACCTTGGTTAGTTGCCTCTAGGCTACGAGATCACCTACTTTCCCCTATTGATAGAAAGGATTCTCGTCTGTGGAAGATGGTGAGGAGCTGGTTGAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44001.p2 GENE.S_Transcript_44001~~S_Transcript_44001.p2 ORF type:complete len:158 (+),score=24.86,MSC|PF09402.6|2.6e-07 S_Transcript_44001:758-1231(+)
MLENNGLVQSSTLDHVKILYVKERARQYLDKLLDIRTTNDGIKEFKCPEILADSYKSVTCRGRQWIAKHIVFLIPICAVLAGLTLLVFRIRRRWYLTNRGEQLYHQVCDILEENALMSKSTMDREPWLVASRLRDHLLSPIDRKDSRLWKMVRSWLS*

Click here to download the sequence:
Link to NCBI Protein BLAST