Transcript Information: S_Transcript_44002.p1


Annotated TAIR IDAT5G46560.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18888061-18890090 | Forward length=387
E-Value1.7E-103
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.9433501517773
Replicate 25.2009057269576
Replicate 34.1187251799604
Condition 2: 8 Hour
Replicate 18.0962399963309
Replicate 26.1064599264762
Replicate 37.193437405155
Condition 3: 24 Hour
Replicate 14.2822476321512
Replicate 24.7802083969963
Replicate 33.6299716513567


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44002.p1 GENE.S_Transcript_44002~~S_Transcript_44002.p1 ORF type:5prime_partial len:403 (+),score=65.77,MSC|PF09402.6|2.7e-17 S_Transcript_44002:2-1210(+)
CTTCCCTCGTTCAAAAACCAAAATATTGAGAATAATAACAGTAGAGACATGATGAGACCATCTCTATATTCAACATCAAAAAGACGCCCAAAATCAGAAACCAAAACCCCAAATACTAATTCAAAACCCTACAATTACAATAGAGATCAATCTCCTTCTCCCTCAACTTCATCGACGGTGACATCAATATTTGAAAAAGTAGAACCACCCCCTGATTTTTTACCATCCTCACAATCCGAATTTCTCAAGCTTCTTCTCGTACTCGCTATTGCTGCTTTTGTTGCTGCCACCTGTCATTTTCTTGTCGGCATTTTTCATCGCCCAACTTTACCCTTTTGTGACAACATCGGCAATCTCGATTCCGGCGATGCCCTTCTTTCCGAATCCTGTGGGCCTTGTCCAAGCAATGGGAGGTGTTATAAGGGCCAGTTGGAGTGCATTCAAGGATATAGAAAGTATGGCAAGATGTGCATTGAAGATGGAGATATCAGTGAAACCGCAAATAAACTTGCAGAATGGGCAAAAGATCATCTATGTGAAGCACATGCACAACACATTTGTCATGGAACTGGAACAATTTGGGTATCTGAGGATGATTTGAGTAATATGTTGGAGAACAATGGGTTAGTTCAGAGTTCAACTTTGGATGATGTGAAAATTATGTATGTCAAAGAAAGAGCAAGGCAATACCTTGACAAATTGCTCGATATAAGGACAACTAATGATGGGATCAAAGAGTTCAAGTGTCCTGAAATTCTAGCTGACAGTTACAAATCAGTGACCTGTCGTGGCCGACAATGGATAGCCAAACATATTGTCTTCCTCATACCAATTTGTGCTGTGCTTGCAGGATTGACTTTGCTGGTGTTCAGAATTCGTAGAAGATGGTATTTGACAAATAGAGGAGAACAGCTTTACCATCAGGTTTGTGACATACTCGAAGAGAATGCTTTGATGTCTAAAAGCACGATGGACAGAGAACCTTGGTTAGTTGCCTCTAGGCTACGAGATCACCTACTTTCGCCTATTGAACGGAAGGATTCTTGTCTGTGGAAGATGGTTGAGGAGTTGGTTGAGTTAGATTCTCGCTTGGATCGCTATCCGAAGCTTGTCAAGGGTGAATCAAAGGTGGTTTGGGAATGGCAAGTTGAAGGTTCTTTGAGTTCTAGGAGGCAACAGCGGAGAGAGGCAAAAGGAAATCTGCCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44002.p1 GENE.S_Transcript_44002~~S_Transcript_44002.p1 ORF type:5prime_partial len:403 (+),score=65.77,MSC|PF09402.6|2.7e-17 S_Transcript_44002:2-1210(+)
LPSFKNQNIENNNSRDMMRPSLYSTSKRRPKSETKTPNTNSKPYNYNRDQSPSPSTSSTVTSIFEKVEPPPDFLPSSQSEFLKLLLVLAIAAFVAATCHFLVGIFHRPTLPFCDNIGNLDSGDALLSESCGPCPSNGRCYKGQLECIQGYRKYGKMCIEDGDISETANKLAEWAKDHLCEAHAQHICHGTGTIWVSEDDLSNMLENNGLVQSSTLDDVKIMYVKERARQYLDKLLDIRTTNDGIKEFKCPEILADSYKSVTCRGRQWIAKHIVFLIPICAVLAGLTLLVFRIRRRWYLTNRGEQLYHQVCDILEENALMSKSTMDREPWLVASRLRDHLLSPIERKDSCLWKMVEELVELDSRLDRYPKLVKGESKVVWEWQVEGSLSSRRQQRREAKGNLP*

Click here to download the sequence:
Link to NCBI Protein BLAST