Transcript Information: S_Transcript_440229.p1


Annotated TAIR IDAT1G53330.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19896027-19897442 | Forward length=471
E-Value5E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.23063761484254
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.2600210763414


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_440229.p1 GENE.S_Transcript_440229~~S_Transcript_440229.p1 ORF type:3prime_partial len:97 (+),score=20.27,PPR_2|PF13041.2|9.6e-10,PPR_2|PF13041.2|2.4e-18,PPR_2|PF13041.2|1.6,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|9.7e-12,PPR_1|PF12854.3|0.00036,PPR|PF01535.16|4,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|0.011,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|0.0024,PPR_3|PF13812.2|1.1e+02 S_Transcript_440229:43-288(+)
ATGGAAGAGCAGGGATGTAAGCCAGATGTTATAAGTTATAATGTACTCATTCGAGCATATTGCAAGGAAGAGAAACTGCGGGCAGCCATGAATTTGTTTGAAGATCTGCCAAGACGAGGATGTAAAGCTGATGTTGTGACATACCAAATACTTTTCAACGGGCTTCTTCATGGGATGAAATTGAAGGAAGCAGCTCTGATATTAGATGAGATGATATTCAAGGGTTACTCTCCTTATTCTGCAGCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_440229.p1 GENE.S_Transcript_440229~~S_Transcript_440229.p1 ORF type:3prime_partial len:97 (+),score=20.27,PPR_2|PF13041.2|9.6e-10,PPR_2|PF13041.2|2.4e-18,PPR_2|PF13041.2|1.6,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|9.7e-12,PPR_1|PF12854.3|0.00036,PPR|PF01535.16|4,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|0.011,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|0.0024,PPR_3|PF13812.2|1.1e+02 S_Transcript_440229:43-288(+)
MEEQGCKPDVISYNVLIRAYCKEEKLRAAMNLFEDLPRRGCKADVVTYQILFNGLLHGMKLKEAALILDEMIFKGYSPYSAA

Click here to download the sequence:
Link to NCBI Protein BLAST