Transcript Information: S_Transcript_44233.p1


Annotated TAIR IDAT3G61490.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:22758439-22760137 | Forward length=476
E-Value1.5E-249
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.18875441198
Replicate 226.859048156975
Replicate 317.713774183063
Condition 2: 8 Hour
Replicate 15.2259849789022
Replicate 24.0233957039824
Replicate 36.571684241852
Condition 3: 24 Hour
Replicate 132.637810116382
Replicate 240.131966743888
Replicate 338.879831296424


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44233.p1 GENE.S_Transcript_44233~~S_Transcript_44233.p1 ORF type:5prime_partial len:506 (+),score=77.71,Glyco_hydro_28|PF00295.13|3.4e-39,Pectate_lyase_3|PF12708.3|1.3e-13 S_Transcript_44233:1-1518(+)
CCGGGACACAACAAACAAAGCAAGCCATTTTATTTCAGACAACAGAAAATGCAGCTACTTCACAGAAATTTCATTAAAAAAAAATTGGAGGAAGAATTTGTGACAAAGGTGACATTGATGTTATTATTGATCAGTACAATTAGCATAGGAGGGGGAGAATGTAGGAAAACAAGGGTGTTAGAAGAGTATACTTCTACATCATTTGAGTACCCTGCCTTAAACTGCAGGGCTCACAGTGCATCTTTGGCTGAGTTTGGAGGAGTTGGTGATGGGAAAACTCTGAACACCAAGGCATTTCAGGATGCAATTAATCACTTAAGCCAATATGAAAATGATGGAGGTGGTCAGCTCTTTGTTCCTCCAGGAAAATGGTTAACTGGAAGCTTCAATCTCACCAGCCACTTCACTCTTTACCTTCATAGGGATGCTGTTCTCCTTGCTTCTCAGGATATTAGCAGCTGGCCAGTGATCGACCCTCTGCCCTCGTATGGTAGAGGAAGGGATGCAAAGGGAGGAAGATATATTAGTCTCATCTTTGGTACAAATCTTACTGATGTCATTATAACAGGTGAAAATGGCACAATTGATGGTCAAGGGGAACTCTGGTGGCAGCAATTTCACAGGAGCAAGCTGAAGTACACACGGCCATACTTGATTGAGTTGATGTTCTCCAATACTATACAAATTTCTAACACAACACTCGTTAATTCCCCAACATGGAATGTTCATCCAGTTTATAGCAGTGATATAGTTATACAGGGGATTACAATCATCTCTCCAGTAAAGTCTCCTAATACAGATGGTATCAACCCAGATTCCTGTAGCAACGTCAGAATTGAGGATTGCTACATTGTCTCTGGGGATGATTGTGTGGCAGTGAAGAGTGGTTGGGATGAGTATGGAATTGCATTTGGCATGCCAACCCAGCACCTGACCATCCGCCGCCTGACTTGTATCTCACCCTACAGCGCGACCATCGCCTTGGGGAGTGAGATGTCTGGTGGGATCAGCGATGTCCGGGCTGAGGACATCACGGCCATCAACACAGAATCCGGGGTCAGGATCAAGACAGGTGCAGGGAGGGGAGGCTATGTAAGGGACATCTATGTAAGGAGAATGACCTTGCAAACGATGAAGTGGGCATTCTGGATGACTGGGAATTATGGGTCACACCCTGATAACAACTATGACCCAAACGCCCTGCCCGATATCCATGGGATTAACTACCGAGACATTGTTGCAGATGAGGTGAAGCAGGCCGGAAGGTTGGAGGGGATCTCAGGCGATCCTTTTACTGGGATTTGCATGTCGAATGTGACGATTTCACTTGGTGTAAATGGGAGGAAGAAGATGCCTTGGAGATGCTCGGATGTGGAGGGGATTACCAGTGGGGTGACACCTCCACTATGTGATGGATTTCGTGATCTAGCTCAGGGAGATGCGATAAAAGAGTGTGATTTTCCGGAAGACAGACTTCCAATTGACAATATCAAGCTCAAACAATGTTCTTACAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44233.p1 GENE.S_Transcript_44233~~S_Transcript_44233.p1 ORF type:5prime_partial len:506 (+),score=77.71,Glyco_hydro_28|PF00295.13|3.4e-39,Pectate_lyase_3|PF12708.3|1.3e-13 S_Transcript_44233:1-1518(+)
PGHNKQSKPFYFRQQKMQLLHRNFIKKKLEEEFVTKVTLMLLLISTISIGGGECRKTRVLEEYTSTSFEYPALNCRAHSASLAEFGGVGDGKTLNTKAFQDAINHLSQYENDGGGQLFVPPGKWLTGSFNLTSHFTLYLHRDAVLLASQDISSWPVIDPLPSYGRGRDAKGGRYISLIFGTNLTDVIITGENGTIDGQGELWWQQFHRSKLKYTRPYLIELMFSNTIQISNTTLVNSPTWNVHPVYSSDIVIQGITIISPVKSPNTDGINPDSCSNVRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTQHLTIRRLTCISPYSATIALGSEMSGGISDVRAEDITAINTESGVRIKTGAGRGGYVRDIYVRRMTLQTMKWAFWMTGNYGSHPDNNYDPNALPDIHGINYRDIVADEVKQAGRLEGISGDPFTGICMSNVTISLGVNGRKKMPWRCSDVEGITSGVTPPLCDGFRDLAQGDAIKECDFPEDRLPIDNIKLKQCSYR*

Click here to download the sequence:
Link to NCBI Protein BLAST