Transcript Information: S_Transcript_442521.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.24193637486528
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_442521.p1 GENE.S_Transcript_442521~~S_Transcript_442521.p1 ORF type:internal len:110 (+),score=18.80,UBN2_3|PF14244.2|2.6e-09,Retrotrans_gag|PF03732.13|7.7e-09,UBN2|PF14223.2|3e-05,UBN2|PF14223.2|5e+02 S_Transcript_442521:1-327(+)
GATATTTGGAATGAGCTTGATGATCGCTATGGTCAATCTAATGGACCTAAACTATATCAACTTCAAAAGGATCTTAGCTCAATGTCTCAAGAAGGTATCACTATTGCTAGTTATTTCACTAAGTTCAAATCAATTTGTGATGAATTGTCAGCTCTCTCTACTATACCTTCTTGCACATGTGGTTCTGCTACTCAATTTCTTAAACTTCAACAAGATCAAAGACTTGTTCAATTTCTCATGGGACTCAATGAAGACTATAATGTTGCTCGTGGTAATATTTTGATGATGAAACCTTTGCTTTCTATTTCTACTGCTTATGGTCTATTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_442521.p1 GENE.S_Transcript_442521~~S_Transcript_442521.p1 ORF type:internal len:110 (+),score=18.80,UBN2_3|PF14244.2|2.6e-09,Retrotrans_gag|PF03732.13|7.7e-09,UBN2|PF14223.2|3e-05,UBN2|PF14223.2|5e+02 S_Transcript_442521:1-327(+)
DIWNELDDRYGQSNGPKLYQLQKDLSSMSQEGITIASYFTKFKSICDELSALSTIPSCTCGSATQFLKLQQDQRLVQFLMGLNEDYNVARGNILMMKPLLSISTAYGLL

Click here to download the sequence:
Link to NCBI Protein BLAST