Transcript Information: S_Transcript_44254.p1


Annotated TAIR IDAT1G50500.2
Annotated Gene NameMembrane trafficking VPS53 family protein
Annotated Gene Symbol(s)HIT1
Annotation TypeOrtholog
Chromosome Positionchr1:18708217-18715597 | Reverse length=847
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.224311596387
Replicate 215.257880971101
Replicate 314.620867883144
Condition 2: 8 Hour
Replicate 117.779723011393
Replicate 218.274835394861
Replicate 318.542219241924
Condition 3: 24 Hour
Replicate 115.817801178129
Replicate 215.782750712203
Replicate 314.768570579381


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44254.p1 GENE.S_Transcript_44254~~S_Transcript_44254.p1 ORF type:complete len:830 (+),score=192.40,Vps53_N|PF04100.8|7.6e-146,COG7|PF10191.5|8.8e+02,COG7|PF10191.5|3.2e-06 S_Transcript_44254:194-2683(+)
ATGATGTCGGTACCACGATCGATGGATAAATCAAGTGCTCTTGATTACATTAACCAGATGTTTCCCACTGAGGCATCACTATCTGGAGTGGAGCCTCTTATGCAAAAAATACACGGTGAAATTCGTAGGGTGGATGCTTCGATACTAGCAGCTGTTCGACAACAGAGTAATTCAGGTACGAAAGCTAAAGAAGATCTTGCTGCTGCCACACATGCAGTGGAGGAACTCATGTACAAAATACGAGAAATAAAATCCAAGGCTGAACAAAGTGAGACGATGGTTCAAGAAATTTGCCGTGACATTAAGAAACTTGACTTTGCGAAGAAGCACATAACAACTACTATCACAGCTCTTCATCGTCTTACCATGTTGGTATCTGCTGTTGAGCAACTACAAGTAATGGCTTCAAAGAGGCAATATAAGGAGGCAGCTGCTCAATTGGAGGCTGTGAACCAGTTATGTAGTCATTTTGAAGCATACAGGGATGTCCCAAAAATAACAGAGTTGCGGGAGAAGTTCAAGAACATTAAGCAAATCCTAAAGTCTCATGTACTTTCAGACTTCTCAAGTTTAGGTACAGGGAAGGAGACAGAAGAAACTAATTTACTGCAGCACCTATCAGATGCTTGCTTAGTGGTTGATGCTTTGGAGCCCTCTGTTCGTGAAGAGCTTGTTAAGAATTTCTTCAGCAGAGAACTTTCATCGTACAGCCAAATTTTTGATGGAGCTGAACTTGCAAAGTTGGACAAAACAGAAAGGAAATATTCATGGATCAAGCGTCGGTTAAGAACAAATGAGGAGATATGGAAAATCTTTCCTTCTTCGTGGCATGTTCCTTATCTACTTTGCATCCAGCTTTGCAAGCTGACAAGAACTCAACTTGTGGAGATACTTGATAATATGAGGGAAAAACCTGATGTGGGGACTCTATTGCTGACACTTCAACGAACTCTGGAGTTTGAAGAAGAGCTGGCGGAGAAGTTTGGTGGAAGTTCTCAAACTAAAGAGCCCAGGATTGACGCTGATGACTCAGAAAAAGGGGAGAATCCTAGCCAAGCTGCACTAGAAATTAGGAAGAAATATGAGAAGAAGCTTGCTGCACAACAAGGAAGTGGAAATGATGAAAAGGACAGTCAAAAAGATTATTCAGTGCCTGGAGCTGGGTTCAATTTCCGTGGAATTATTTCATCTTGCTTTGAACCTCACCTGACAGTGTATGTAGAACTGGAAGAGAGAACACTAATGGAGCATCTGGAGAAACTTGTACAGGAAGAAACTTGGGAAACTGAAGAAGGCAGTCAGACCAATATCTTATCCAGTAGCATGCAGGTCTTTTTGATTATCAGACGGAGCTTGAAGCGGTGCAGTGCTTTGACAAAGAACCAGACATTGTTTAATTTGTTTAAGGTGTTCCAAAAAATTCTAAAAGCTTATGCGACAAAGCTGTTTGCCAGACTACCAAGGGGTGGAACTGGAATTGTAGCTGCGGCTACTGGAATGGACGGACAAATTAAGACATCAGAGAAAGATGAAAGGACGATCTGCTATATTGTAAACACAGCTGAGTATTGTCATAAAACGTCTGGTGAATTGGCTGAAAATATATCAAAGATTATCGATTCTCAGTTTGCGGATAGAGTGGACATGTCCGAAGTGCAGGATGAGTACTCAGTTGTCATAACGAGATCACTGATAACACTGGTGAACGGTATTGAAACTAAATTTGATGCTGAAATGGCTGCAATGACACGTGTTCCTTGGGGAACACTTGAAAGTGTTGGTGACCAATCAGAGTATGTCAATGGCATAAACACAATCCTTACAAGTAGTCTTCCTGTACATGGGAGTCTTCTTTCCCCGATTTACTTCCAGTTTTTCCTGGACAAGCTTGCTTCGTCACTAGGTCCACGCTTCTACCTTAACATTTTCAAATGCAAGCAGATATCAGAGACTGGGGCCCAGCAGATGCTCTTGGATACTCAAGCTGTGAAAACGATTCTGCTGGAGGTTCCTTCCCTTGCAAAACAAACTTCTGGTGCAGCGAGCTACTCTAAATTTGTTAGTCGTGAGATGAGTAAAGCTGAAGCCCTCTTGAAGGTTATATTATCTCCTGTTGATTCTGTGGCAGATACATATCGTGCTTTATTGCCAGAGGGAACTCCTTCAGAGTTTCAGCGTATTCTGGAGCTCAAGGGTCTCAAAAAGGCAGACCAGCAAACCATACTTGATGACTTCAACAAACATGGTCTGAGCATCAATCAATCATCTGTGGCTCCATCTGCTGTATCAGCTGCTCCCCCTCCACCCGCAACACCGTCTATTATCAGCCCAGCTACATCCGCTATCGTTGCTTCTCGAGAGGACGTGCTTGCAAGAGCTGCTGCACTGGGCCGAGGAGCAGCAACTACTGGTTTCAAGAGGTTCCTTGCACTAACTGAAGCTGCCAAAGACCGAAAGGATGGACCTTTTAGGAAACTCTTCAATCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44254.p1 GENE.S_Transcript_44254~~S_Transcript_44254.p1 ORF type:complete len:830 (+),score=192.40,Vps53_N|PF04100.8|7.6e-146,COG7|PF10191.5|8.8e+02,COG7|PF10191.5|3.2e-06 S_Transcript_44254:194-2683(+)
MMSVPRSMDKSSALDYINQMFPTEASLSGVEPLMQKIHGEIRRVDASILAAVRQQSNSGTKAKEDLAAATHAVEELMYKIREIKSKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDVPKITELREKFKNIKQILKSHVLSDFSSLGTGKETEETNLLQHLSDACLVVDALEPSVREELVKNFFSRELSSYSQIFDGAELAKLDKTERKYSWIKRRLRTNEEIWKIFPSSWHVPYLLCIQLCKLTRTQLVEILDNMREKPDVGTLLLTLQRTLEFEEELAEKFGGSSQTKEPRIDADDSEKGENPSQAALEIRKKYEKKLAAQQGSGNDEKDSQKDYSVPGAGFNFRGIISSCFEPHLTVYVELEERTLMEHLEKLVQEETWETEEGSQTNILSSSMQVFLIIRRSLKRCSALTKNQTLFNLFKVFQKILKAYATKLFARLPRGGTGIVAAATGMDGQIKTSEKDERTICYIVNTAEYCHKTSGELAENISKIIDSQFADRVDMSEVQDEYSVVITRSLITLVNGIETKFDAEMAAMTRVPWGTLESVGDQSEYVNGINTILTSSLPVHGSLLSPIYFQFFLDKLASSLGPRFYLNIFKCKQISETGAQQMLLDTQAVKTILLEVPSLAKQTSGAASYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPSEFQRILELKGLKKADQQTILDDFNKHGLSINQSSVAPSAVSAAPPPPATPSIISPATSAIVASREDVLARAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNP*

Click here to download the sequence:
Link to NCBI Protein BLAST