Transcript Information: S_Transcript_443788.p1


Annotated TAIR IDAT4G23800.1
Annotated Gene NameHMG (high mobility group) box protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:12390228-12392516 | Forward length=456
E-Value2.2E-198
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.144821992245
Replicate 27.7920169469001
Replicate 36.1475786945335
Condition 2: 8 Hour
Replicate 17.1084634390443
Replicate 25.5041849827899
Replicate 38.8393098203197
Condition 3: 24 Hour
Replicate 11.4303197523603
Replicate 24.8565310520744
Replicate 36.1553798845819


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_443788.p1 GENE.S_Transcript_443788~~S_Transcript_443788.p1 ORF type:complete len:504 (+),score=189.64,HMG_box|PF00505.15|1.4e+03,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|7.3e-19,HMG_box|PF00505.15|5.9e+03,HMG_box|PF00505.15|1.8e-12,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|2.5e-18,HMG_box_2|PF09011.6|8.1e+03,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|2e-13,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|1.4e-13,HMG_box_2|PF09011.6|1.1e+04,HMG_box_2|PF09011.6|4.9e-12 S_Transcript_443788:61-1572(+)
ATGGCTGCCACTGCAACTTCCAATCTCCCCATCGTAATTGACCCTGTTCCGGCAAAGAAGGGGAGGAGCAGAAAGGCATTGAAAGAGAAAAACCCATCAACAAATGAAGCAAATATTCTGGCCGGAAAACCCCTTGAGACCTCACAATCTCCGGCCATAGATTCCGAACTCAGCAAGGAGAACCATGAGAGCCTCTCACACCCCCGGTCGGAGAAGAAGAAATCGAAGAAATCCAAGGCAAAGCAAACCGAACCCTCAATTAATTTTGAGAACGAAATGCAAGAAATGCAAGAAATGTTGGAGAAATTGAAGATTGAGAAGGAGAAGACTGAGGAAATGTTGAAGGAGAAAGATGACATGTTGAAGCAGAAAGAGGAGGAGATCGAAACTCGGGATAAAGAGCAGCAGAAGCTTCAGGTTGAGCTCAAGAAACTCCAGAAGATGAAGGAGTTTAAACCCACCATGACTTTGCCTATCATCCAATCATTGAAAGACAAAGAATTGGAGAAGAAAGACAAGAAGAAGAAGGATTGCCCTGAAAGGAAAAGGCCAGCTTCAGCCTATGCTTTATGGTGCAAAGAACAATGGAGAGAGATCAAGAAAGAAAATCCAGATGCGGATTTTAAAGAAGTGTCAAACATAATGGGCACCAAGTGGAAGACTCTTAGCTCAGAAGAGAAGAAGCCATATGAAGAGAAGTACCAGGCGGATAAGGAAGCTTATCTACAGATTGTAAGCAAAGAAAAGCGTGAGAATGAAGCAATGAAACTGTTAGAGGATGAGCACAAACAAAAGACTGCAATGGAGCTTCTGGATCAGTACCTACAGTTCAAACAAGAAGCAGAGAAGGAGACCAAGAAAACAAAGAAGGAGAGGGACCCATCGAAGCCTAAGCAGCCAGTCAGTGCTTTCTTCTTGTACTCGAACGAAAGGCGTGCTGCTTTGATTGGTGAGGGCAAGAATTTGCTCGAGGCCTCAAAGCTAATGAGTGAAGAATGGAAAAGCATGACAGAGGAGCAAAAATTGCCTTACGAAAAGATTGCAAAGGAAAACAAGGAGAAGTACCAGCAGGACATGGAGGTATACAAGCAGAAGAAAGAGGAAGAAGCTGCCACCATCAAGAAAGAAGCGGAAGAAATTGTGAAACTTCAAAAAGCTGAGGCTTTTCAGCTGCTTAAGAAGAAAGAGAAGACTGAAAATATCATCAAGAAATCTAAGGACATGAAAAAGAAGCAAAAGGGTGAGAAGAAAGCTGATCCAAACAAGCCCAAGAGGCCTCTTTCTTCTTTCTTCCTGTTCAGCAAGGAAGAAAGGAAGAATTTGCTCCAAGAGCGGCCTGGTATCAACAACTCCACTGTCAATGCACTCCTTTCATTGAAATGGAAGGAATTAAGTGACGAGGAGAAGAAAATGTGGAACCAGAAGGCAGCCGAGGGCATGGAAGCTTACAAGAAAGAGCTGGAAGAATACAACAAGCAATTGGAAGCCAAGGCAGGCAAATCAGAGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_443788.p1 GENE.S_Transcript_443788~~S_Transcript_443788.p1 ORF type:complete len:504 (+),score=189.64,HMG_box|PF00505.15|1.4e+03,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|7.3e-19,HMG_box|PF00505.15|5.9e+03,HMG_box|PF00505.15|1.8e-12,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|2.5e-18,HMG_box_2|PF09011.6|8.1e+03,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|2e-13,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|1.4e-13,HMG_box_2|PF09011.6|1.1e+04,HMG_box_2|PF09011.6|4.9e-12 S_Transcript_443788:61-1572(+)
MAATATSNLPIVIDPVPAKKGRSRKALKEKNPSTNEANILAGKPLETSQSPAIDSELSKENHESLSHPRSEKKKSKKSKAKQTEPSINFENEMQEMQEMLEKLKIEKEKTEEMLKEKDDMLKQKEEEIETRDKEQQKLQVELKKLQKMKEFKPTMTLPIIQSLKDKELEKKDKKKKDCPERKRPASAYALWCKEQWREIKKENPDADFKEVSNIMGTKWKTLSSEEKKPYEEKYQADKEAYLQIVSKEKRENEAMKLLEDEHKQKTAMELLDQYLQFKQEAEKETKKTKKERDPSKPKQPVSAFFLYSNERRAALIGEGKNLLEASKLMSEEWKSMTEEQKLPYEKIAKENKEKYQQDMEVYKQKKEEEAATIKKEAEEIVKLQKAEAFQLLKKKEKTENIIKKSKDMKKKQKGEKKADPNKPKRPLSSFFLFSKEERKNLLQERPGINNSTVNALLSLKWKELSDEEKKMWNQKAAEGMEAYKKELEEYNKQLEAKAGKSES*

Click here to download the sequence:
Link to NCBI Protein BLAST