Transcript Information: S_Transcript_443837.p1


Annotated TAIR IDAT4G14368.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:8274279-8278810 | Reverse length=1106
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.055968456856321
Replicate 20.046399136819169
Replicate 30.058178978181705
Condition 2: 8 Hour
Replicate 10.1793933990926
Replicate 20.32934372340292
Replicate 30.089656561955758
Condition 3: 24 Hour
Replicate 10.11485217397789
Replicate 20.14298934748484
Replicate 30.23869442654684


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_443837.p1 GENE.S_Transcript_443837~~S_Transcript_443837.p1 ORF type:5prime_partial len:951 (+),score=243.28,RCC1|PF00415.14|1.6,RCC1|PF00415.14|2.3e-09,RCC1|PF00415.14|5.7e-09,RCC1|PF00415.14|1.5e-13,RCC1|PF00415.14|1.7e-11,RCC1|PF00415.14|3.9e-07,RCC1|PF00415.14|6.8e-13,RCC1_2|PF13540.2|2e+03,RCC1_2|PF13540.2|0.00036,RCC1_2|PF13540.2|6.8e-07,RCC1_2|PF13540.2|0.0094,RCC1_2|PF13540.2|0.16,RCC1_2|PF13540.2|0.00065,RCC1_2|PF13540.2|0.0003,RCC1_2|PF13540.2|91,BRX|PF08381.7|7.6e-25,FYVE|PF01363.17|1.6e-13,BRX_N|PF13713.2|3.4e+03,BRX_N|PF13713.2|2.1e-09 S_Transcript_443837:1-2853(+)
TTTCGACTTAGTAATGCAGATGGTTTTCGGCTTAGTGTTTCAAGCACTCCTAGTACTTCAAGTCAAGGTTCTGGACAAGATGACATTGAATCACTAGGTGATGTTTACATATGGGGTGAATTATGGTCCGACGCAGGTTCTCCTGAAGGATCAGATGTCCTAATTCCCAAACCCTTGGAGTCCAACGTTGTTTTGGATGTTCATCAAATTGCTTGTGGTGTCCGACATGTTGCTCTTGTAACTAGGCAAGGTGAGGTTTTCACCTGGGGGGAAGAATTAGGGGGGAGACTTGGCCATGGAATTGAAAGAAACTTCACACGGCCTCAACTTGTTGAATACCTCGCCGTCACAAATGTAGAGTTTGTGTCATGTGGAGCGTACCATTCATGTGCAGTGTCAACTTCAGGGGACTTGTTCACTTGGGGTGATGGTGTCCATAATGCTGGAGTTCTTGGCCATGGCACTGATGCTAGTCATTGGGTTCCAAAACGAGTATCTGGTCCTTTTGAGGGTGTCCAAGTTTTCTCCATTGCATGTGGCACTTGGCATTCAGCATTGACGACTGCCAATGGGAAACTCTTCACATTCGGAGATGGAACATTCGGTGTTTTAGGCCATGGAGATCGAGAAAGTGTTCCTTACCCAAAGGAAGTTCAGCAACTAAATGGCTTAAAAACAATTAAGGTGGCATGTGGAGTTTGGCATACTGCAGCTATTGTAGAAGTTATGAACCCTGCAGCCTCGGGTGCCAACATTTCTTCCAGAAAATTGTTCACTTGGGGGGATGGTGACAAATATCGTTTAGGCCATGGAAACAAGGAGACATATTTGCTTCCTACTTGTGTCTCTGCTCTTATTGATTATAATTTTTTCCAGATCGCATGTGGACATACTTTTACTGTTGCCCTTACAACATCAGGTCATGTATTCACCATGGGCAGTTCAGCACATGGTCAACTTGGAAATCCACAGGCAGATGGGAAAGTACCTTGTTTGGTCCAAGAGAAACTTGTTGGTGAATTTGTGGAAGAAATTACATGCGGGGCATACCATGTGGCAGTCCTCACTTCAAGAAGTGAGGTATATACTTGGGGAAAAGGTGCCAATGGAAGGTTGGGGCATGGTGATATGGATGACCGCAAGACACCGACAATGGTTGAGGCACTTAAAGATAGACATGTGAAGAGTGTAGCATGTGGATCAAGTTTCACTTCAGCTATATGCATCCATAAGTGGGTTTCTGGAGCTGATCAATCTGTTTGCTCCGGATGCCGGCAAGCCTTCGGTTTCACCAGGAAAAGGCACAACTGTTATAACTGTGGTCTTGTGCATTGCCATGCATGTAGTTCTAGAAAGGCAATCAGAGCAGCTCTTGCCCCCACTCCAAGCAAACCACATCGTGTCTGTGATGCTTGCTACAACAAACTGAAGGCCACTACAACTGGAACTGCCTCACATTTCAGCAAGAGACCTACTGCCCCTCGCCGTTCAATTGATAGCTGCAGGGAAAGACTTGACAAGCCTGAAGCAAAGTCTTCGAGAATACTACTCTCCCCCACTACAGAACCTGTTAAATACCTTGAGGTCAAGAGTCAAAGGTTGGGGGCCAAATCAGAGTCAGTTTCTATGGTCCGAGCTTCACAAGTGCCATCACTTCAACAGCTGAAAGATATTGCTTTTCCTAGCTCGATAAGTGCTCTTCAAACTGCCTTGAAACCTGTTGCCACAGCACCACCTCAAGCACCGCCATTTCCTGGCGCTGGATCTTCAAGACCAGCTTCACCATATTCAAGCAGACCCAGTCCTCCACGTTCTGGAACTCCTGTATTTTCCCGAGGTGTCCTTGATAGTCTCAGGAAATCAAATGAACTTCTGAGCCAAGAAGTGTCAAAGCTTCAAAACCATCTTAAGAACTTAAAGCAAAAGAGTGACTTCCAAGATGAGGAGATTAAAAAATTACAGAAAAATGCTAAAGAAGCTTCGCTGTTCGCTGCTGGGCAATCTTCTAAGTGTAAAGTTGCAAAGGAAGTTGTTCAGTCCTTTGCTTCTCAGTTGAAGGATATAGTGGAGAAGATGCCTCCTGAACTTGGTGAGACTGAGAACCTCAAGGTGGTGCAAACCCAAGCTTTGGCTTTTGTAGAAGCATGCCAAAGCGAAGCTTGGGACTCTCTAGCTTCTCTGCCTGCAGGAACAGAGACTGAGAAACAAAACTTGCAAAATGGAAGCTATGCAGCCAGTGGAGCTGCTTCAACGAAAGGCCATAAGATCATAACTCTAGACTCCAGTATTATTGGTGACTTATCACAGGCTGGTAAAATTGATGTGGAGGTTAATCAAAAAGCTTCATCTGATGCAACTGAAACTGCTTCCAAAGATGCAGCTGAAGATGGGGTCCAGAATTCAAATGGACCACCTTCATCGGATGTATCAGAATCTGAAACTAATAAAGGCACAGAAAATGGAGCAGTTGGAGAGCCCAAGGCACCACCGTCTCCTGATACTCAGGCATCATCGAATCAAGGCAGGGAAAATGGTCCAGTGCCATCTCAAGCTTCAACAAGGAGTGAAGGAGGATCTAGAGAAAGTATTGAACAATTTGAACCTGGAGTTTACGTCACTTTCATTCAAATTCGGAATGGTACAAAAGTCTTCAGGCGTGTCAGATTCAGCAAACGAAGGTTTGCAGAGACGCAAGCTGAGGAATGGTGGAGGGAGAACAGAGACCGAGTGTTGAGGAAATATGTTCCACCTCCTCAGAATAATGCAAGTGCTCCAAGCACCCCACCACCAGAACCTGCCGCTCCACCACCAAGCGAAGATGAAAGCAATGAGCAAGCTCATTCAGCAACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_443837.p1 GENE.S_Transcript_443837~~S_Transcript_443837.p1 ORF type:5prime_partial len:951 (+),score=243.28,RCC1|PF00415.14|1.6,RCC1|PF00415.14|2.3e-09,RCC1|PF00415.14|5.7e-09,RCC1|PF00415.14|1.5e-13,RCC1|PF00415.14|1.7e-11,RCC1|PF00415.14|3.9e-07,RCC1|PF00415.14|6.8e-13,RCC1_2|PF13540.2|2e+03,RCC1_2|PF13540.2|0.00036,RCC1_2|PF13540.2|6.8e-07,RCC1_2|PF13540.2|0.0094,RCC1_2|PF13540.2|0.16,RCC1_2|PF13540.2|0.00065,RCC1_2|PF13540.2|0.0003,RCC1_2|PF13540.2|91,BRX|PF08381.7|7.6e-25,FYVE|PF01363.17|1.6e-13,BRX_N|PF13713.2|3.4e+03,BRX_N|PF13713.2|2.1e-09 S_Transcript_443837:1-2853(+)
FRLSNADGFRLSVSSTPSTSSQGSGQDDIESLGDVYIWGELWSDAGSPEGSDVLIPKPLESNVVLDVHQIACGVRHVALVTRQGEVFTWGEELGGRLGHGIERNFTRPQLVEYLAVTNVEFVSCGAYHSCAVSTSGDLFTWGDGVHNAGVLGHGTDASHWVPKRVSGPFEGVQVFSIACGTWHSALTTANGKLFTFGDGTFGVLGHGDRESVPYPKEVQQLNGLKTIKVACGVWHTAAIVEVMNPAASGANISSRKLFTWGDGDKYRLGHGNKETYLLPTCVSALIDYNFFQIACGHTFTVALTTSGHVFTMGSSAHGQLGNPQADGKVPCLVQEKLVGEFVEEITCGAYHVAVLTSRSEVYTWGKGANGRLGHGDMDDRKTPTMVEALKDRHVKSVACGSSFTSAICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSRKAIRAALAPTPSKPHRVCDACYNKLKATTTGTASHFSKRPTAPRRSIDSCRERLDKPEAKSSRILLSPTTEPVKYLEVKSQRLGAKSESVSMVRASQVPSLQQLKDIAFPSSISALQTALKPVATAPPQAPPFPGAGSSRPASPYSSRPSPPRSGTPVFSRGVLDSLRKSNELLSQEVSKLQNHLKNLKQKSDFQDEEIKKLQKNAKEASLFAAGQSSKCKVAKEVVQSFASQLKDIVEKMPPELGETENLKVVQTQALAFVEACQSEAWDSLASLPAGTETEKQNLQNGSYAASGAASTKGHKIITLDSSIIGDLSQAGKIDVEVNQKASSDATETASKDAAEDGVQNSNGPPSSDVSESETNKGTENGAVGEPKAPPSPDTQASSNQGRENGPVPSQASTRSEGGSRESIEQFEPGVYVTFIQIRNGTKVFRRVRFSKRRFAETQAEEWWRENRDRVLRKYVPPPQNNASAPSTPPPEPAAPPPSEDESNEQAHSAT*

Click here to download the sequence:
Link to NCBI Protein BLAST