Transcript Information: S_Transcript_44398.p1


Annotated TAIR IDAT3G46510.1
Annotated Gene Nameplant U-box 13
Annotated Gene Symbol(s)PUB13, ATPUB13
Annotation TypeOrtholog
Chromosome Positionchr3:17124106-17126539 | Reverse length=660
E-Value1.1E-286
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.681094478849
Replicate 226.83488922477
Replicate 323.360799039227
Condition 2: 8 Hour
Replicate 113.774622486326
Replicate 213.12481786864
Replicate 312.315823060656
Condition 3: 24 Hour
Replicate 121.909609071307
Replicate 221.119314787441
Replicate 320.999687341741


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44398.p1 GENE.S_Transcript_44398~~S_Transcript_44398.p1 ORF type:complete len:675 (+),score=158.07,Arm|PF00514.19|9.4e-11,Arm|PF00514.19|0.0015,Arm|PF00514.19|8e-07,Arm|PF00514.19|0.031,Arm|PF00514.19|0.0014,Arm|PF00514.19|5.9e+03,U-box|PF04564.11|1.3e-20,U-box|PF04564.11|1e+04,HEAT_2|PF13646.2|0.0046,HEAT_2|PF13646.2|8.3,HEAT_2|PF13646.2|18,Neurochondrin|PF05536.7|20,Neurochondrin|PF05536.7|0.0001 S_Transcript_44398:217-2241(+)
ATGGAGACAAGTACGGCATCAACAATGGTATTGGAGGATGAGAAAGGAGGACAAGAAGAGCAAAGGGAGTTACTGAAGATAATAACCGATACAATCGAAGAAATCAATTCAATAACAGACTACCGTCCTTGTATCAAGAAACAGTTTTGCAATCTTGCAAGAAGACTCAAGCTTCTTCTCCCAATGTTCGACGAAATCAAGGAAGCTAATCAACCTTTGTCTCTCGATTCTCTTCAATCCTTTCATCTTTTGTCTCATTCCCTTCAACCCGCTTTGTTTCTCCTCCGATTTGGCTCTCGTGCCAGCAAGATTTTTCTGGCCCTTGAAAGAGAGGAGACAACGACTAGGCTGCATGAAGTGACATCTGAATTGGAGAAAGCTCTGGATGAAATTCCCTATGAGAAGCTTGAAATTTCTGATGAAGTCAGGGAACAGGTTGAGCTCGTTCTTTCTCAGTTTAAAAGAGCCAAGGGAAGGGTTGATCCATCTGATGAAGAACTTGACAAGGATCTTTCATCTCTATACAATAACAGCATGGATGCAGATATGGATCTGGCTTTAGTGAAGCGAGTGGCTGAAAAGTTACAGTTGATCAAGATTGAGGATCTGATGCAAGAGTCTGTCTCTCTTTCTGAGATGGTTGCTGCAACTGGTGGAGATCCTAATGAGAAAATACAGAGGATGACCAATCTGCTTAACAAAATTCAATATGTTGTCCAGACTGAAAAACCCCACGTGGATACTGCAATGGAGATGAATAATATTACTGTGAAGTTTATGGGAGTGACACCTACTGAAGGTAGTCAGACATCTCTTGTCATACCAGATGACTTTCGCTGTCCAATTTCACTTGAGCTGATGAGGGATCCAGTTATTATTTCAACTGGACAGACCTATGAACGTTCATGTATTGAGAAATGGATTGCAGCAGGTCACAAAACTTGCCCAAAGACACAGCAGACACTCCAGAGCCTTGTTCTTACTCCCAACTACACCTTGCGATGCCTTATAATACAATGGTGTGAAAAGAATGGGGTACAAATGCCCCCAAGGCCAGGCAATTCTCAAGAGGGAAAACCTACCTCTTCTTGCTCACCTGCAGAACGTTCAAAGATCCAGGAGCTCCTTTGCAAGCTAACCTCCTGCAACCCCGAGGACCAGCGGATTGCAGCTGGTGAAATCAGGCTCCTTGCAAAGCGAAATGCTGATAACCGAGTGGCAATTGCTGAAGCTGGGGCTATCCCACCTCTCGTTGACCTCCTCTTTAAACCAGATTCACGCACCCAGGAGCATGCTGTGACTGCTCTCCTTAACCTCTCAATATGTGATGATAACAAAGGTAGCATCATAAACTCTGGGGCAGTGCCTGGCATAGTCCACGTGCTGAAAAAGGGTGGCATGGAGGCTAGAGAAAATGCAGCTGCTACGCTCTTTAGTCTCTCAGTTGTGGATGAAAACAAGGTCACAATTGGTGCTCTGGGTGCAATTCCTCCACTCGTTATGTTACTGAGTGAGGGCACCCAAAGAGGGAAAAAAGATGCTGCGACTGCACTTTTCAACTTATGCATTTACCAAGGAAATAAAGGAAAGGCAGTCAGGGCTGGGATTGTTCCTATATTGATGAGATTATTGACAGAGCCTGGAGGTAGCATGCTGGATGAGGCACTAGCGATTCTTGCGGTACTTGCTAGCCACCCTGAAGGTAAAGCTGCCATAGGCTCTGCAGATGCCTTGCCTGTTTTGGCGGATGTGATTGGGAATGGATCACCCCGGAATAAGGAGAATGCAACTGCAGTACTGGTGCACCTTTGTTCAGGAGACCATAACTATCTAGTGGCAGCTCAGGAGCTTGGAGTTATGGGCCCACTCCTTGAGATGACCCAAAATGGCACTGATAGAGGTAAGCGGAAGGCCCAGCAATTACTTGAGCTAATGGATCGATACGTTGAGCAGCAGAAGCAGGCCCAGGCACAAGCCGGGACTCAGGGACAGAATCACGCCCCTACTGCTGCTGAAGGGGGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44398.p1 GENE.S_Transcript_44398~~S_Transcript_44398.p1 ORF type:complete len:675 (+),score=158.07,Arm|PF00514.19|9.4e-11,Arm|PF00514.19|0.0015,Arm|PF00514.19|8e-07,Arm|PF00514.19|0.031,Arm|PF00514.19|0.0014,Arm|PF00514.19|5.9e+03,U-box|PF04564.11|1.3e-20,U-box|PF04564.11|1e+04,HEAT_2|PF13646.2|0.0046,HEAT_2|PF13646.2|8.3,HEAT_2|PF13646.2|18,Neurochondrin|PF05536.7|20,Neurochondrin|PF05536.7|0.0001 S_Transcript_44398:217-2241(+)
METSTASTMVLEDEKGGQEEQRELLKIITDTIEEINSITDYRPCIKKQFCNLARRLKLLLPMFDEIKEANQPLSLDSLQSFHLLSHSLQPALFLLRFGSRASKIFLALEREETTTRLHEVTSELEKALDEIPYEKLEISDEVREQVELVLSQFKRAKGRVDPSDEELDKDLSSLYNNSMDADMDLALVKRVAEKLQLIKIEDLMQESVSLSEMVAATGGDPNEKIQRMTNLLNKIQYVVQTEKPHVDTAMEMNNITVKFMGVTPTEGSQTSLVIPDDFRCPISLELMRDPVIISTGQTYERSCIEKWIAAGHKTCPKTQQTLQSLVLTPNYTLRCLIIQWCEKNGVQMPPRPGNSQEGKPTSSCSPAERSKIQELLCKLTSCNPEDQRIAAGEIRLLAKRNADNRVAIAEAGAIPPLVDLLFKPDSRTQEHAVTALLNLSICDDNKGSIINSGAVPGIVHVLKKGGMEARENAAATLFSLSVVDENKVTIGALGAIPPLVMLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGIVPILMRLLTEPGGSMLDEALAILAVLASHPEGKAAIGSADALPVLADVIGNGSPRNKENATAVLVHLCSGDHNYLVAAQELGVMGPLLEMTQNGTDRGKRKAQQLLELMDRYVEQQKQAQAQAGTQGQNHAPTAAEGG*

Click here to download the sequence:
Link to NCBI Protein BLAST