Transcript Information: S_Transcript_44470.p1


Annotated TAIR IDAT5G24740.1
Annotated Gene NameProtein of unknown function (DUF1162)
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8470073-8489703 | Reverse length=3464
E-Value2E-158
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.541389072814
Replicate 222.111709268285
Replicate 318.442736083601
Condition 2: 8 Hour
Replicate 123.736908956099
Replicate 224.256838103828
Replicate 320.276050160836
Condition 3: 24 Hour
Replicate 122.765177917027
Replicate 222.462802161036
Replicate 322.369884173052


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44470.p1 GENE.S_Transcript_44470~~S_Transcript_44470.p1 ORF type:5prime_partial len:451 (+),score=94.98,VPS13_C|PF16909.1|5.4e-48,VPS13_C|PF16909.1|0.013 S_Transcript_44470:1-1353(+)
CAAAACAAGATATATGTGGAATCCTTTTCTTTGGCCCCTGTTAAGGTTACTTTGAGTTTTTCAAGCAATCCATGGATGCTCAAAAAGGGGGGTTTGACATCAGGAGAGTCTTTCATCCATAGGGGTATTATGGCTTTCGCTGATGTTGAGGGGGCACAAATTTCCCTCAGGGAATTGACAATAGCACATCACATGGCTAGTTGGGAATCCATTCAACAAATTCTCTTCAAGCATTATTCTAGGCAATTTCTTCATGAGATGTACAAGGTGTTTGGTTCTGCTGGTGTAATTGGAAATCCTATGGGCTTTGCCAGAAGAGTTGGCCTTGGTGTTAAGGACTTCTTATCAGTTCCAGCAAGGGGAGTTCTGCAGAGTCCCTCTGGGCTGATCTCTGGAATGGCTCAAGGCACTAGTAGCCTGCTTAGCAACACATTGTATGCTATGAGCGACACAGCAACACAATTCAGTAAAGCTGCTCATAAGGGAATTCTTGCTTTTACCTTTGATGATTATGATGCCGCAAAAATGGGAAAACAAAGGATGGTTGCATCATCTCAAACGAAAGGTGTAATCAATGAATTGTTGGAGGGATTAACTGGTCTCCTCCAATCTCCCGTCAAAGGAGCTGAGAAGCATGGTCTTCCCGGAGTTCTGTCAGGACTTGCTTTAGGTGTTACTGGGCTTGTCGCTAAACCTGCTGCTAGTGTTCTTGAAGCTACAGGAAGAACTGCACAAAGTATCAGAAACCGGAGTAGGCTTCACAGAATGGGACTCCATCACTTCCGTGTTCGCCTTCCCAGATATTTGAGTGCCGAACTGCCTCTCAGACCCTATTCTTGGGAGGAAGCAATCGGAACAGCTGTGCTCTTGGAGGTTGATGATGGTCTGAAATTTAAAGATGAGGTCCTTGTAATGTGCAAATCACTAAAAGATGCTGGGAAATTTGTTGTGCTCACAGAGAAGCTCATCTTGATCATTGGGTGTTCAAGTCTAGCAGATCTGGGTAAGCCCGAGTTCCGAGGTGTTGTTGCAGAGCCAGAGTGGATAGTAGAAGTTGAAATCGCTTTGGAGAGCGTGATTCATGCTGATGTTGATGGAGAAGTCGTACACATTGTTGGAAGCAATTCAGAAACTCTACATGGCCAAAATCTGCATCACCAAAAGAGAACTGGAGCAAAATTTAAGCGGTGGGATCAATCTCCGACTCCACTTCCACTCTTTCAGACTAACTTGGAATTGTCTTCTAATGAAGATGCAGAGTATTTTTTGAGGGTTCTAATGTCCGCATTTGAGCAAGGCAAAGAACAAGGTTGGGGAAATGTCTATCTTCTTCATAAGAGTAATATAAAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44470.p1 GENE.S_Transcript_44470~~S_Transcript_44470.p1 ORF type:5prime_partial len:451 (+),score=94.98,VPS13_C|PF16909.1|5.4e-48,VPS13_C|PF16909.1|0.013 S_Transcript_44470:1-1353(+)
QNKIYVESFSLAPVKVTLSFSSNPWMLKKGGLTSGESFIHRGIMAFADVEGAQISLRELTIAHHMASWESIQQILFKHYSRQFLHEMYKVFGSAGVIGNPMGFARRVGLGVKDFLSVPARGVLQSPSGLISGMAQGTSSLLSNTLYAMSDTATQFSKAAHKGILAFTFDDYDAAKMGKQRMVASSQTKGVINELLEGLTGLLQSPVKGAEKHGLPGVLSGLALGVTGLVAKPAASVLEATGRTAQSIRNRSRLHRMGLHHFRVRLPRYLSAELPLRPYSWEEAIGTAVLLEVDDGLKFKDEVLVMCKSLKDAGKFVVLTEKLILIIGCSSLADLGKPEFRGVVAEPEWIVEVEIALESVIHADVDGEVVHIVGSNSETLHGQNLHHQKRTGAKFKRWDQSPTPLPLFQTNLELSSNEDAEYFLRVLMSAFEQGKEQGWGNVYLLHKSNIK*

Click here to download the sequence:
Link to NCBI Protein BLAST