Transcript Information: S_Transcript_446925.p1


Annotated TAIR IDAT5G60710.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24410953-24414849 | Reverse length=704
E-Value4E-112
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12573071449692
Replicate 20.20846730290565
Replicate 30.29043678871812
Condition 2: 8 Hour
Replicate 10.20149975102803
Replicate 20.14092503080143
Replicate 30.50352395917279
Condition 3: 24 Hour
Replicate 10.13760556529508
Replicate 20.071382083705031
Replicate 30.39719754968687


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_446925.p1 GENE.S_Transcript_446925~~S_Transcript_446925.p1 ORF type:complete len:635 (+),score=134.75,VWA|PF00092.24|3e-28,VWA_2|PF13519.2|3.1e-23,VWA_2|PF13519.2|5.6e+03,VWA_3|PF13768.2|4.7e-22,VWA_3|PF13768.2|2.1e+03,zf-RING_11|PF17123.1|1.4e-10,zf-RING_11|PF17123.1|5.4e+03,zf-RING_11|PF17123.1|6.2e+03,VWA_CoxE|PF05762.10|3.1e-09,Vwaint|PF14624.2|1.1e-08,zf-RING_2|PF13639.2|3.6e-09,zf-RING_2|PF13639.2|1.6e+04,zf-C3HC4|PF00097.21|1.8e-05 S_Transcript_446925:228-2132(+)
ATGATGCGGGAAACATGTGCAATATGCTTGGGAAGCATGAAAGCAGGGAATGGGAGAGCATTGTTCACAGCACAATGTTCACACATCTTCCACTTCAACTGCATTACTTCCAATGTTCAACATGGCAACCACATCTGCCCGATTTGCCGTTCAACTTGGACTGATCTCCCTTCACAAGTCTTGCCTGGTCCTCAATTCAACTATCAACGGCCTTTTTTCAACCCTCCTAATTTCAACTTCAATGTTCAGCCAGCTCCATTATTCTCTTCACTACCGCCTATGTTCACAAACTCAGACGACTTTGCTGATGATGAGCCTCTTCCAACCCCAGTTTCGGAACCTGATCATGAAACATCATCCTTGTCTTCCTCAGCCCCGCCGCAGGGTGATAGCCTAAGTGTCAGGGCCTTGCCTGAGTATGCTGCACTGAGCAGATCAGAACTGTCTACATCATTCACTGTCCTTGTGGGAGTCCGTGCCCCTCCTCTGTCTCCGGAAGCTACAGACAGGCCTGGCATCCGTGCTCCTCTTGACTTGGTGGCTGTCCTTGATGTGAGTGGCAGTATGGGCGGGGGCAAGATCAGGCTGCTTAAGCAGGCTGTCAACTTTGTTGTCGACAACCTTGGCCCAACAGATCGATTTTCTATCATCACATTCTCGACTTCTGCTCGGAGGGTGACACCACTGAGAAGGATGACAGACATGGGAAAAACTGAAATGGCTCAGGCTGTGAACTCCCTCAGGGCATCTGGCTCGACCAACATCATTGCAGGGTTGAAGAAAGCTGTTCAGGTCCTTGAGCAACGCAGGGAGAAGAACCCGGTTGCAAGCATTATTCTGCTATCCGATGGGCAAGATAACCAAAATGGTCATGGTCCTGCTGATTTTCTCCGTGCCCTCAACAGTCTCCCACCTTTCAGCCGGTCTAGGGACAGCACAAATCAGACTCACACCGAAGCTGTCCCTGTACATACATTTGGGTTCGGCTCTGATCATGATGCTGCAGCACTTCATGCTATAGCAGACAAATCGGGTGGGACTTTCTCCTACATTGAGTCAATTGATGTCATCCAAGATGCCTTTGCTCAATGTATTGCCGGGCTCATGAGTGTCGTGGCACAGGAAGTTGAGATTCGAGTTCAGTCAGGTTCCAATGGGGTCCAAATCCAGTCTATTGCTTCTGGAAGGTACAAAAACGCAGTTGACAATGATGCTCGAAAAGATGGTGTGATCTATATTGGAGATCTCTATGCAGAAGAGGAAAAGAAATTCTTAGTATACCTCTCAGTCCCGCGGGAAACTGATTCCTCAACAACAAAGCTTCTGGAGGTTATGTGCTCTCACAAGGACCCACTATTGAGTTGTACCCTTTTGTCTGAATCAAAAACAGTTGAGATCAGTCGCCCCTCGACAGAGGCCTTAACAGCATCAGACAGGCAAGTGTGCTTGGAGGTTGACAGAGAGAGAAACCGCATCTTGGCAGCAGAAGGGATAGCTCAGGCGCAGGCAATGGCAGAGAGAGGAGAACTACAAGATGCTCGATCTTTGCTTACTGACAGTAGACAAAGGATCTTATCCTCTACTGCAGCTCAAGCAGGGGATTCCCAGTGTGTGTGGCTCGAGAGTGAAGTCAGAGAAGTCCAAGACCGGATGTCAAGTAGGGCTCAGTACCAATCTGGAGGGAGAGCCTATGCACTCTCGAAAGGGAGCTCGCATATGTCTCAGAGAGCTTCAACTCAGGCCATACGGCTGCAAAGTCATCAACAACCACAAGGCTTTTCATTTGGTTCGAGCATGGCTGCTGCTCCTCCTGCAGGGGCGGGCTATCTGACCTCCTTTATGAGAAAAATGGTGACAAAATCACAGGAGCTCCGCAAATCTGGAGGTAGTGATGCTACAAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_446925.p1 GENE.S_Transcript_446925~~S_Transcript_446925.p1 ORF type:complete len:635 (+),score=134.75,VWA|PF00092.24|3e-28,VWA_2|PF13519.2|3.1e-23,VWA_2|PF13519.2|5.6e+03,VWA_3|PF13768.2|4.7e-22,VWA_3|PF13768.2|2.1e+03,zf-RING_11|PF17123.1|1.4e-10,zf-RING_11|PF17123.1|5.4e+03,zf-RING_11|PF17123.1|6.2e+03,VWA_CoxE|PF05762.10|3.1e-09,Vwaint|PF14624.2|1.1e-08,zf-RING_2|PF13639.2|3.6e-09,zf-RING_2|PF13639.2|1.6e+04,zf-C3HC4|PF00097.21|1.8e-05 S_Transcript_446925:228-2132(+)
MMRETCAICLGSMKAGNGRALFTAQCSHIFHFNCITSNVQHGNHICPICRSTWTDLPSQVLPGPQFNYQRPFFNPPNFNFNVQPAPLFSSLPPMFTNSDDFADDEPLPTPVSEPDHETSSLSSSAPPQGDSLSVRALPEYAALSRSELSTSFTVLVGVRAPPLSPEATDRPGIRAPLDLVAVLDVSGSMGGGKIRLLKQAVNFVVDNLGPTDRFSIITFSTSARRVTPLRRMTDMGKTEMAQAVNSLRASGSTNIIAGLKKAVQVLEQRREKNPVASIILLSDGQDNQNGHGPADFLRALNSLPPFSRSRDSTNQTHTEAVPVHTFGFGSDHDAAALHAIADKSGGTFSYIESIDVIQDAFAQCIAGLMSVVAQEVEIRVQSGSNGVQIQSIASGRYKNAVDNDARKDGVIYIGDLYAEEEKKFLVYLSVPRETDSSTTKLLEVMCSHKDPLLSCTLLSESKTVEISRPSTEALTASDRQVCLEVDRERNRILAAEGIAQAQAMAERGELQDARSLLTDSRQRILSSTAAQAGDSQCVWLESEVREVQDRMSSRAQYQSGGRAYALSKGSSHMSQRASTQAIRLQSHQQPQGFSFGSSMAAAPPAGAGYLTSFMRKMVTKSQELRKSGGSDATS*

Click here to download the sequence:
Link to NCBI Protein BLAST