Transcript Information: S_Transcript_44696.p1


Annotated TAIR IDAT5G56930.1
Annotated Gene NameCCCH-type zinc finger family protein
Annotated Gene Symbol(s)emb1789
Annotation TypeOrtholog
Chromosome Positionchr5:23027949-23030565 | Reverse length=675
E-Value1.1E-52
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2765360342214
Replicate 21.7254527808275
Replicate 31.2500290359062
Condition 2: 8 Hour
Replicate 11.3342267143149
Replicate 21.3996985593155
Replicate 31.1335852219542
Condition 3: 24 Hour
Replicate 11.6628534878137
Replicate 22.2214789240633
Replicate 32.3933326807774


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44696.p1 GENE.S_Transcript_44696~~S_Transcript_44696.p1 ORF type:complete len:959 (+),score=215.95,zf-CCCH|PF00642.20|3.7e-05,zf-CCCH|PF00642.20|0.037,zf-CCCH|PF00642.20|2.1e-05,Torus|PF16131.1|4.2e-06,Torus|PF16131.1|0.0038,Torus|PF16131.1|0.055 S_Transcript_44696:813-3689(+)
ATGACAACTCCGTCAAAAAATTTAATAGCAGAATTCTTTGGACCTCCAAAGAAACGACCTTTGAGGAGCAACACTATGCGTACGGTTGCCAGAATTTATTCTGTCTTTCCGGAGTTAAACCCCTTGAACCGGCCCCCCTCATTTGCTCAAACTCCAGCAAATAATTCTGGGTCTTGTAGCAGTGATCAGGATGATCCTTTAAGAACAGATTATGTGGGTGATGGTTTGCCACTGAGGAGTGAGGAAGAAGCGAGCCGAAAATTGGTTGGTGATGATGATATGAAGGTTCAGGATGTGTCTACTTGTAGCGCGGTAAGTGATGGTAGTAACGCTGTGGTTTTTGGTGAAGGAGACGGTTTGAATGGCTCGGAAATGATGATAGATAAGTCTGGTGAGAAAAATGATACTGAAACCATTGGTAAAATGGCTATTGATGACAAGGACACTAGTGATCACAATACGGAGGGCCACAATGTCCAAGAAAATTTGTTAGGTATTGAGAGAATTCTCATGGATGAATCAGATGAATTAGGTCAATTGCAACTGCCAGATGAAGATATCAACTTTGACATTTTTGATGATGTTGGCTCCTTTCTGAATACAGATGTTCTTGCTAAGCATTCTGCACCAGTTGAAAGCAATGTCTGTGGAGGACTGGATATTCAAGGGAACATGAACGAGGATGTAGTAGGCGAGAAGAAAGGGAAAGATATTGAAGCAAAGGGCTCAACTTTTGGAGGTGATGTAGCTTCTGATGCTCAAGTGTCTGTGGAGAGAGATATCTCCAACTGTTTAGAAGTGGCAGAAAAGCTTCCAGGTACACATCCTGATCATGTTGGGAGAGAGGAGACAAACATTTGCAATGAGAAAGTTCCTCAGCATTTATCAGAAAAGGAAGGTTTAATTTTTTCCGTATCGATGAGTGAAGGCAAGGGAGGTTCTGCTTTAATGAGTTCTGTTGATATAGAGGAACACAAATCAGGAAGTCCTGTCAATCAAAAAACAAAGAAGCGTAAGAAGGCAGACCAAAAGGGTGTAAAATCAGGAAAAAGGAAGCTTATGTCTGCAGATGCCGAGGTTTCCAATATCACAAAATCGGGGGGCTCTGATACATCAGTTCATGGGAAGATGCTGAAGCAAAATGTGTCTGGCAGAGGGAACTTGCCTGCAACAAAGGTTGGCAATTGTTCGCCTAAGAGTATGGAGAATATTAAGTACACTCGGGAGCAGCTCCTGCATCTTCAACAGATGGATGCTGTTTCCAAGGATATTTTGAAAGTTGTACAAGAAATCGGCTGCGAGTTATTTGGTGGAGGTCGCAATTGTGCCGCCCGAGAATCAATTGAGGTCCGTGGTTTCAACGAGGAGGAACCGCTAGGTGCTCCTACAGAGGAGAAGAAAGTGGAGGAAAAGGATCATGCTATGTTGAAGAATAAAAAACGGGGGTCTTCATCAACCGCAAAGAAGGAAAATAAAAAGAGGAAGAAAAGGCAGAAGCGAGCAGAAAATAACAGGAAACTTGGTGTCAAGAGGTTGAAGCTTAGACCACCTGTTTTGAAACCAAAAGTGGTGCCACCTTGTCGGCATTACCTCAAAGGAAGCTGCCATGAGGGTGAGAAATGCAAGTTTTCACATGATGTAATACCCCGAACGAAATCCACGCCTTGCTCTTATTTCGCACGCAACGTGTGCTTGAAAGGGGATGACTGTCCATTTGATCATCAGTTATCCAAGTATACATGCACCAATTATGCGACTACAGGCTTCTGCAGTAGAGGTGATAGCTGCTTGTTTTCCCATAAGATTAAGGATAAGGAAGGATCAGAATCCACCGTTTGTGTCTTTAAAGAGATCAAGTCATCGGGTCACCTTGATAAGTCAATCTCCAAACAGCAGCGCGATGGCCAAGCATCCTCTTCCAGATTTCCTAGTATAAATGTAGAGGAGAATTCAGTGACCCTGATCAATCAGCCTGGAAAAGAACCAAAAGGTTTGAGCTTTCTCTCATTTGGAAAATCTCCACAGGATGATTCTGGTCAGCATAAAGAGGTGAACTCATCCCAGCAAAGCAAAGTTGCTACCGGAACTGGTGGTGAACCAAACCGAGCACAACCAGAAAGATCAGGTAATGTGAGTAACGCTATAATGGACAGCTCAGCATCAGTAGCACCTCGAGGAATCGGTTTTCTCTCATGCGACAAAACATCAACTGGTAGCTCTGTCATCAAGGCACAAACCATCTCACCAACCCCTAGGGACCAGCCAAGCATTCTTTCATTTGGGAAATCACTTCTGCATCAATCTTCTAAAGATCAACAAGCAAACTCATCTATGAGAATTGATGGTGGTGTTAACAAAGGTAATCAGCCAAACCAGGAAACACCAAATAGAGAATTAAATCGCTGTGAAATATTCAAAGATAATCCGACTCCAACAACCCCAAAAGGAATTATTTTTCCGGCTTCTGGTGGACCTTCATATGATACTTCTGGTGACAAATCGCAAGCTGTTACTTCTACTGAGCTTAGTAATTCTCAGATATGCGTTAGAGAAAAGGGAGCTGTGCATGAATCATGCAAATTGAAAGCAATACAAACCGAGGAACGGTGTTCTCCTGCTTCTCCTGGTCAACGCTCTATCAAGTTTGGTGTACCAGTCAAAAGCACACCGATTACCGCTCAGAGGGCACTTTTGTCCACTCTTGCATTTGCAGCCAAGTATGAATCTGGGATAAAAATGAGTCCGGCAGCTGTCACTAGGGAGGTCAATAAGAATGAAGCGACAAGTAGTGGTAGTGGACGCAGACAGAATGAGCCGAAAAAAGCTTCGGCCATTTTAGAGTTTTTGTACAGTGGGGGCAATAAACAGAAGCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44696.p1 GENE.S_Transcript_44696~~S_Transcript_44696.p1 ORF type:complete len:959 (+),score=215.95,zf-CCCH|PF00642.20|3.7e-05,zf-CCCH|PF00642.20|0.037,zf-CCCH|PF00642.20|2.1e-05,Torus|PF16131.1|4.2e-06,Torus|PF16131.1|0.0038,Torus|PF16131.1|0.055 S_Transcript_44696:813-3689(+)
MTTPSKNLIAEFFGPPKKRPLRSNTMRTVARIYSVFPELNPLNRPPSFAQTPANNSGSCSSDQDDPLRTDYVGDGLPLRSEEEASRKLVGDDDMKVQDVSTCSAVSDGSNAVVFGEGDGLNGSEMMIDKSGEKNDTETIGKMAIDDKDTSDHNTEGHNVQENLLGIERILMDESDELGQLQLPDEDINFDIFDDVGSFLNTDVLAKHSAPVESNVCGGLDIQGNMNEDVVGEKKGKDIEAKGSTFGGDVASDAQVSVERDISNCLEVAEKLPGTHPDHVGREETNICNEKVPQHLSEKEGLIFSVSMSEGKGGSALMSSVDIEEHKSGSPVNQKTKKRKKADQKGVKSGKRKLMSADAEVSNITKSGGSDTSVHGKMLKQNVSGRGNLPATKVGNCSPKSMENIKYTREQLLHLQQMDAVSKDILKVVQEIGCELFGGGRNCAARESIEVRGFNEEEPLGAPTEEKKVEEKDHAMLKNKKRGSSSTAKKENKKRKKRQKRAENNRKLGVKRLKLRPPVLKPKVVPPCRHYLKGSCHEGEKCKFSHDVIPRTKSTPCSYFARNVCLKGDDCPFDHQLSKYTCTNYATTGFCSRGDSCLFSHKIKDKEGSESTVCVFKEIKSSGHLDKSISKQQRDGQASSSRFPSINVEENSVTLINQPGKEPKGLSFLSFGKSPQDDSGQHKEVNSSQQSKVATGTGGEPNRAQPERSGNVSNAIMDSSASVAPRGIGFLSCDKTSTGSSVIKAQTISPTPRDQPSILSFGKSLLHQSSKDQQANSSMRIDGGVNKGNQPNQETPNRELNRCEIFKDNPTPTTPKGIIFPASGGPSYDTSGDKSQAVTSTELSNSQICVREKGAVHESCKLKAIQTEERCSPASPGQRSIKFGVPVKSTPITAQRALLSTLAFAAKYESGIKMSPAAVTREVNKNEATSSGSGRRQNEPKKASAILEFLYSGGNKQKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST