Transcript Information: S_Transcript_44697.p1


Annotated TAIR IDAT5G56930.1
Annotated Gene NameCCCH-type zinc finger family protein
Annotated Gene Symbol(s)emb1789
Annotation TypeHomolog
Chromosome Positionchr5:23027949-23030565 | Reverse length=675
E-Value3E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2225608406821
Replicate 22.1536345555058
Replicate 32.5203739116417
Condition 2: 8 Hour
Replicate 11.6653233219453
Replicate 21.5771910646228
Replicate 31.2021953096085
Condition 3: 24 Hour
Replicate 13.743483287976
Replicate 23.3184539726756
Replicate 32.3799542985305


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44697.p1 GENE.S_Transcript_44697~~S_Transcript_44697.p1 ORF type:complete len:922 (+),score=204.67,zf-CCCH|PF00642.20|3.6e-05,zf-CCCH|PF00642.20|0.035,zf-CCCH|PF00642.20|2.1e-05,Torus|PF16131.1|4e-06,Torus|PF16131.1|0.0037,Torus|PF16131.1|0.053 S_Transcript_44697:812-3577(+)
ATGACAACTCCGTCAAAAAATTTAATAGCAGAATTCTTTGGACCTCCAAAGAAACGACCTTTGAGGAGCAACACTATGCGTACGGTTGCCAGAATTTATTCTGTCTTTCCGGAGTTAAACCCCTTGAACCGGCCCCCCTCATTTGCTCAAACTCCAGCAAATAATTCTGGGTCTTGTAGCAGTGATCAGGATGATCCTTTAAGAACAGATTATGTGGGTGATGGTTTGCCACCGAGGAGTGAGGAAGAAGCGAGTCGAAAATTGGTTGGTGACGATGGTGTGAAGGTTCAGGATGTGTTTGCTCATAGAGCGGTAAGTGATGGTGGTAACGCTGGGGTTTTGGGTGAAGGAGACGGTTTGAATGGCTCGGAAATGATGATAGATAAGTCTGGTGAGAAAAATGATACTGAAACCATTGGTAAAATGGCTATTGATGACAAGGACACTAGTGATCACAATACGGAGGGCCACAATGTCCAAGAAAATTTGTTAGATGTTCTTGCTAAGCATTCTGCACCAGTTGAAAGCAATGTCTGTGGAGGACTGGATATTCAAGGGAACATGAACGAGGATGTAGTAGGCGAGAAGAAAGGGAAAGATATTGAAGCAAAGGGCTCAACTTTTGGAGGTGATGTAGCTTCTGATGCTCAAGTGTCTGTGGAGAGAGATATCTCCAACTGTTTAGAAGTGGCAGAAAAGCTTCCAGGTACACATCCTGATCATGTTGGGAGAGAGGAGACAAACATTTGCAATGAGAAAGTTCCTCAGCATTTATCAGAAAAGGAAGGTTTAATTTTTTCCGTATCGATGAGTGAAGGCAAGGGAGGTTCTGCTTTAATGAGTTCTGTTGATATAGAGGAACACAAATCAGGAAGTCCTGTCAATCAAAAAACAAAGAAGCGTAAGAAGGCAGACCAAAAGGGTGTAAAATCAGGAAAAAGGAAGCTTATGTCTGCAGATGCCGAGGTTTCCAATATCACAAAATCGGGGGGCTCTGATACATCAGTTCATGGGAAGATGCTGAAGCAAAATGTGTCTGGCAGAGGGAACTTGCCTGCAACAAAGGTTGGCAATTGTTCGCCTAAGAGTATGGAGAATATTAAGTACACTCGGGAGCAGCTCCTGCATCTTCAACAGATGGATGCTGTTTCCAAGGATATTTTGAAAGTTGTACAAGAAATCGGCTGCGAGTTATTTGGTGGAGGTCGCAATTGTGCCGCCCGAGAATCAATTGAGGTCCGTGGTTTCAACGAGGAGGAACCGCTAGGTGCTCCTACAGAGGAGAAGAAAGTGGAGGAAAAGGATCATGCTATGTTGAAGAATAAAAAACGGGGGTCTTCATCAACCGCAAAGAAGGAAAATAAAAAGAGGAAGAAAAGGCAGAAGCGAGCAGAAAATAACAGGAAACTTGGTGTCAAGAGGTTGAAGCTTAGACCACCTGTTTTGAAACCAAAAGTGGTGCCACCTTGTCGGCATTACCTCAAAGGAAGCTGCCATGAGGGTGAGAAATGCAAGTTTTCACATGATGTAATACCCCGAACGAAATCCACGCCTTGCTCTTATTTCGCACGCAACGTGTGCTTGAAAGGGGATGACTGTCCATTTGATCATCAGTTATCCAAGTATACATGCACCAATTATGCGACTACAGGCTTCTGCAGTAGAGGTGATAGCTGCTTGTTTTCCCATAAGATTAAGGATAAGGAAGGATCAGAATCCACCGTTTGTGTCTTTAAAGAGATCAAGTCATCGGGTCACCTTGATAAGTCAATCTCCAAACAGCAGCGCGATGGCCAAGCATCCTCTTCCAGATTTCCTAGTATAAATGTAGAGGAGAATTCAGTGACCCTGATCAATCAGCCTGGAAAAGAACCAAAAGGTTTGAGCTTTCTCTCATTTGGAAAATCTCCACAGGATGATTCTGGTCAGCATAAAGAGGTGAACTCATCCCAGCAAAGCAAAGTTGCTACCGGAACTGGTGGTGAACCAAACCGAGCACAACCAGAAAGATCAGGTAATGTGAGTAACGCTATAATGGACAGCTCAGCATCAGTAGCACCTCGAGGAATCGGTTTTCTCTCATGCGACAAAACATCAACTGGTAGCTCTGTCATCAAGGCACAAACCATCTCACCAACCCCTAGGGACCAGCCAAGCATTCTTTCATTTGGGAAATCACTTCTGCATCAATCTTCTAAAGATCAACAAGCAAACTCATCTATGAGAATTGATGGTGGTGTTAACAAAGGTAATCAGCCAAACCAGGAAACACCAAATAGAGAATTAAATCGCTGTGAAATATTCAAAGATAATCCGACTCCAACAACCCCAAAAGGAATTATTTTTCCGGCTTCTGGTGGACCTTCATATGATACTTCTGGTGACAAATCGCAAGCTGTTACTTCTACTGAGCTTAGTAATTCTCAGATATGCGTTAGAGAAAAGGGAGCTGTGCATGAATCATGCAAATTGAAAGCAATACAAACCGAGGAACGGTGTTCTCCTGCTTCTCCTGGTCAACGCTCTATCAAGTTTGGTGTACCAGTCAAAAGCACACCGATTACCGCTCAGAGGGCACTTTTGTCCACTCTTGCATTTGCAGCCAAGTATGAATCTGGGATAAAAATGAGTCCGGCAGCTGTCACTAGGGAGGTCAATAAGAATGAAGCGACAAGTAGTGGTAGTGGACGCAGACAGAATGAGCCGAAAAAAGCTTCGGCCATTTTAGAGTTTTTGTACAGTGGGGGCAATAAACAGAAGCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44697.p1 GENE.S_Transcript_44697~~S_Transcript_44697.p1 ORF type:complete len:922 (+),score=204.67,zf-CCCH|PF00642.20|3.6e-05,zf-CCCH|PF00642.20|0.035,zf-CCCH|PF00642.20|2.1e-05,Torus|PF16131.1|4e-06,Torus|PF16131.1|0.0037,Torus|PF16131.1|0.053 S_Transcript_44697:812-3577(+)
MTTPSKNLIAEFFGPPKKRPLRSNTMRTVARIYSVFPELNPLNRPPSFAQTPANNSGSCSSDQDDPLRTDYVGDGLPPRSEEEASRKLVGDDGVKVQDVFAHRAVSDGGNAGVLGEGDGLNGSEMMIDKSGEKNDTETIGKMAIDDKDTSDHNTEGHNVQENLLDVLAKHSAPVESNVCGGLDIQGNMNEDVVGEKKGKDIEAKGSTFGGDVASDAQVSVERDISNCLEVAEKLPGTHPDHVGREETNICNEKVPQHLSEKEGLIFSVSMSEGKGGSALMSSVDIEEHKSGSPVNQKTKKRKKADQKGVKSGKRKLMSADAEVSNITKSGGSDTSVHGKMLKQNVSGRGNLPATKVGNCSPKSMENIKYTREQLLHLQQMDAVSKDILKVVQEIGCELFGGGRNCAARESIEVRGFNEEEPLGAPTEEKKVEEKDHAMLKNKKRGSSSTAKKENKKRKKRQKRAENNRKLGVKRLKLRPPVLKPKVVPPCRHYLKGSCHEGEKCKFSHDVIPRTKSTPCSYFARNVCLKGDDCPFDHQLSKYTCTNYATTGFCSRGDSCLFSHKIKDKEGSESTVCVFKEIKSSGHLDKSISKQQRDGQASSSRFPSINVEENSVTLINQPGKEPKGLSFLSFGKSPQDDSGQHKEVNSSQQSKVATGTGGEPNRAQPERSGNVSNAIMDSSASVAPRGIGFLSCDKTSTGSSVIKAQTISPTPRDQPSILSFGKSLLHQSSKDQQANSSMRIDGGVNKGNQPNQETPNRELNRCEIFKDNPTPTTPKGIIFPASGGPSYDTSGDKSQAVTSTELSNSQICVREKGAVHESCKLKAIQTEERCSPASPGQRSIKFGVPVKSTPITAQRALLSTLAFAAKYESGIKMSPAAVTREVNKNEATSSGSGRRQNEPKKASAILEFLYSGGNKQKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST