Transcript Information: S_Transcript_447676.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value9E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12435981885598
Replicate 20.10309714746502
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.66351281630309
Replicate 20.37066981550101
Replicate 30.29465005146164


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_447676.p1 GENE.S_Transcript_447676~~S_Transcript_447676.p1 ORF type:3prime_partial len:428 (+),score=66.31,UBN2|PF14223.2|7.7e-16,gag_pre-integrs|PF13976.2|1.9e+03,gag_pre-integrs|PF13976.2|8.5e+03,gag_pre-integrs|PF13976.2|7.8e-12,UBN2_2|PF14227.2|1.4e-06 S_Transcript_447676:67-1281(+)
ATGGAAAAGGGATCTTTGTCGATCCTGGAATATATCGAAAAGAAACGAACACTGGCAGATACTCTAGCTTCTACTTCGAACCCGATTTCCGATGATGATCTTGTGAATTTCATTCTCTTTGGTCTAGATGAAGATTATTCCCCTTTTCGTTCCTCCATCAACACTCGTGTGGAGCCTGTTTCTGTAGATGAGCTGCTGGGTATGCTTCTCCAAGAGGAGGAAAGAATTCAACACTCACGAAAAGCACTCATGTCAGCAAATATCATCGTCAAAGGTGGGTCTCAGCGCAATATGACTTCACATGGGAACCAGTTTGGTAAGAATACCTCCTCCTACACAAATAAGACCAAATCTAACAATTTTAAAGGCAATACTTATGGTGGGAATCAATCTGGGTCCCTCAAAAATGGATCGAACAAACCACGGATTGTTTGCCAAATTTGCTCAAAACCCGGTCATACAGCACTTCAGTGTTACAATCGTTTCAATCATGCCTTTACCCCTGAAAAGCCATCAAAGCTCTCTGCTCTCATTGCCTCTTCTGACACCCCTTCGGATCCGTCATGGTACATTGATTCAGGTGCCACAAATCATCTAACAGCAGATCTGAACAATCTTTCAATGCACTCCCCATTTACTGGAGATGATCAAATTGAAGTTGGTAATGGTATGGGTCTCTCAATTTCTCATATTGGACATTCTAGTCTTAAGAGCCATGGTGATTCTTTGCTTCTGAAAAATATTTTACATGTGCCAAAAATCACCAAAAATCTTTTAAGTGTATCACAATTTACTCGTGACAATAATGTTTCCATGGAATTTTATCCTAATATTTGTCTTGTTAAGGATATGCAGGGAAGAGTGGTACTTCGGGGGATGCTTGATCGAGGTCTCTATAAGCTGAATGATGATCCTTCTACTTTACCCAAACCAAACACTGTCTCGTCCTATGCATTCGTTGGTGAACGAACCTCTCTTCAAGGGTGGCATGATCGTCTTGGTCACCCAAGTTCAACAATAGTTCGTAGGATAGTTTCTACCTTTAATCTTCCCTTAGATTCAAATAAAGAGTTGCCCCTTTGTGGTCCTTGTCAAATGGGAAAGAGTCATCGTCTCCATTTACCTCATTCTCATGTTTCTTCTGAGTCTTTGTTTGATCTAGTATACTCAGATGTATGGGGACCAGCACCTGTTCCTTCAAATAATGGAAGTGTC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_447676.p1 GENE.S_Transcript_447676~~S_Transcript_447676.p1 ORF type:3prime_partial len:428 (+),score=66.31,UBN2|PF14223.2|7.7e-16,gag_pre-integrs|PF13976.2|1.9e+03,gag_pre-integrs|PF13976.2|8.5e+03,gag_pre-integrs|PF13976.2|7.8e-12,UBN2_2|PF14227.2|1.4e-06 S_Transcript_447676:67-1281(+)
MEKGSLSILEYIEKKRTLADTLASTSNPISDDDLVNFILFGLDEDYSPFRSSINTRVEPVSVDELLGMLLQEEERIQHSRKALMSANIIVKGGSQRNMTSHGNQFGKNTSSYTNKTKSNNFKGNTYGGNQSGSLKNGSNKPRIVCQICSKPGHTALQCYNRFNHAFTPEKPSKLSALIASSDTPSDPSWYIDSGATNHLTADLNNLSMHSPFTGDDQIEVGNGMGLSISHIGHSSLKSHGDSLLLKNILHVPKITKNLLSVSQFTRDNNVSMEFYPNICLVKDMQGRVVLRGMLDRGLYKLNDDPSTLPKPNTVSSYAFVGERTSLQGWHDRLGHPSSTIVRRIVSTFNLPLDSNKELPLCGPCQMGKSHRLHLPHSHVSSESLFDLVYSDVWGPAPVPSNNGSV

Click here to download the sequence:
Link to NCBI Protein BLAST