Transcript Information: S_Transcript_44793.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2.5E-35
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4163782169984
Replicate 20.86520743362803
Replicate 30.67158422713391
Condition 2: 8 Hour
Replicate 10.4778798950618
Replicate 20.37599745612986
Replicate 30.65679082256245
Condition 3: 24 Hour
Replicate 10.24476059933439
Replicate 21.2061972547636
Replicate 31.8368995925295


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44793.p1 GENE.S_Transcript_44793~~S_Transcript_44793.p1 ORF type:complete len:357 (+),score=46.99,UBN2_3|PF14244.2|1.9e-41,Retrotrans_gag|PF03732.13|4.5e-07 S_Transcript_44793:310-1380(+)
ATGGCAGGAGGAGATAAAATTATCATTAAACCAGAATATTACTTGAGCTCATCTGACGGGCCAGGAAATATTATTTCTCATTATACTCTTACCAGGGAAAACTATGGGAGATGGGTTAAACACATCTCAAATTTTCTTCGATCAAAAGACAAATTTTGTTTTGTTGATGGAACCCTTCCCAAACCCGATGTGAAATCTCCAGATGTAAATGCCTGGACAAAATGTAACTCTATGGTGATTGCTTGGATCAATAATACTATTTCGATTGAACTCCAGGGAAGTATTTCTTTTGCAGAGACGGCACGAGACCTTTGGCTTGATCTTGAAGAACGTTTTTCACAAGGTAAAGCACCTCGTATCTATCAATTGAAGAGCGACATTACTCAAATGTCGCAAGACGGAAAATCTGTCCTTGGTTATTTTTCCAATCTGAAGACACTATGGGATGAATTGGGTGATTTAGATCCTTTACCTGAGTGTACTTGCAAGGCCAAAGCTGAATATCAACGACGTCATGAAGAGGAGCGAGTATATCAATTTCTTATGGGACTTGACGCTGAGATATTTGATTCGGTAAGATCTCAAATTCTTAATGCTGAAAATTTACTCAATGTGAGTAAGGCTTATGCTGCAGTTATTAGAGCGGAAAAACAACGTGGACTCGTCCAAAATCGGCACATAAATCCCAACAATGCAGCCTTGGAATCCATTGGAGTGGCTGCTGCAGTGAAAGGGAGTTACAGACCTCGTTGTACTCACTGTAACAAGTTGGGACATGAGAAGAAGCAATGTTATGAACTTATTGGCTACCCTCCAAACTGGGACAACAGGCGTGCTTCTAACCGCAACAACAACAGTAGAGAGAGGTTACAGTCAGGGGAAAAGGACGTAGCACGCCTCAATATGCAGCAGCGACAATTGCAAATTCAGAATCTCAAATGGATCAAACCAATCAAAATTCAGTCAATGCTCCTGATGTTGGTTTTGCAGGATTTACTCAATCTCAAGTGGACCACTTGTTCAATCTTTTCAAAGAAAAACAGGTTCAAGAAAATTCTTCTAATTATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44793.p1 GENE.S_Transcript_44793~~S_Transcript_44793.p1 ORF type:complete len:357 (+),score=46.99,UBN2_3|PF14244.2|1.9e-41,Retrotrans_gag|PF03732.13|4.5e-07 S_Transcript_44793:310-1380(+)
MAGGDKIIIKPEYYLSSSDGPGNIISHYTLTRENYGRWVKHISNFLRSKDKFCFVDGTLPKPDVKSPDVNAWTKCNSMVIAWINNTISIELQGSISFAETARDLWLDLEERFSQGKAPRIYQLKSDITQMSQDGKSVLGYFSNLKTLWDELGDLDPLPECTCKAKAEYQRRHEEERVYQFLMGLDAEIFDSVRSQILNAENLLNVSKAYAAVIRAEKQRGLVQNRHINPNNAALESIGVAAAVKGSYRPRCTHCNKLGHEKKQCYELIGYPPNWDNRRASNRNNNSRERLQSGEKDVARLNMQQRQLQIQNLKWIKPIKIQSMLLMLVLQDLLNLKWTTCSIFSKKNRFKKILLII*

Click here to download the sequence:
Link to NCBI Protein BLAST