Transcript Information: S_Transcript_448434.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.20912596736981
Replicate 30
Condition 2: 8 Hour
Replicate 10.20213640111027
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.4141210140397
Replicate 20.10741142927179
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_448434.p1 GENE.S_Transcript_448434~~S_Transcript_448434.p1 ORF type:complete len:211 (-),score=16.33,UBN2_3|PF14244.2|9.3e-18,UBN2|PF14223.2|1.9e-14,UBN2_2|PF14227.2|8.4e-09 S_Transcript_448434:82-681(-)
ATGGCCAACACCTCTAACCCAAACAATGCAGAACCAACCAAACCCCTACTCCTCATCCAATTTAACAATGCAATTAAACTTACACCTACAAATTATCCAACTTGGCAAACCCAAATTCGATCAACCCTTATTGGGTATGATCTCTACCACTTCGTTGCCGGTACAACATCACCTCCAGACGCCACAACTCTTGGAACTGATGGAAAAGAAACAGCCAACCCAGCATATCAAACTTGGTTACGTCAAGATCGTCTCGTTTTTGGGGCGCTTCTTGGCACTCTTTCTCCTACAGTGGCACCACTAGTTTGTCATGCTACCACTTCTGCTCAAGTATGGCAAATACTAGAGAAAACTTATGCTAATCCCTCACGGGGTCATATTCTTCAAATTAAAGCCACACTCAAAAACATCACAAAAACCACCCAAACCATCACAGAATATATGCAAGCCATTAAATCATGCACTGACAAACTAGCCTCCATGAACAAACCAATGGATCAAGAGGATATTATAGCCAACGTTCTCAATGGCCTAGACTATGAGACATACAAACCTATCATTGACACCATAAATGGCCGTGATACTCCCATCACCTTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_448434.p1 GENE.S_Transcript_448434~~S_Transcript_448434.p1 ORF type:complete len:211 (-),score=16.33,UBN2_3|PF14244.2|9.3e-18,UBN2|PF14223.2|1.9e-14,UBN2_2|PF14227.2|8.4e-09 S_Transcript_448434:82-681(-)
MANTSNPNNAEPTKPLLLIQFNNAIKLTPTNYPTWQTQIRSTLIGYDLYHFVAGTTSPPDATTLGTDGKETANPAYQTWLRQDRLVFGALLGTLSPTVAPLVCHATTSAQVWQILEKTYANPSRGHILQIKATLKNITKTTQTITEYMQAIKSCTDKLASMNKPMDQEDIIANVLNGLDYETYKPIIDTINGRDTPITF*

Click here to download the sequence:
Link to NCBI Protein BLAST