Transcript Information: S_Transcript_449713.p2


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value3E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.67091599752556
Replicate 20.83430716814132
Replicate 30.077490487746221
Condition 2: 8 Hour
Replicate 10.089602480324088
Replicate 20.093999364032465
Replicate 30.4478119244744
Condition 3: 24 Hour
Replicate 10.55071134850237
Replicate 20.38090439624113
Replicate 30.52987488246042


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_449713.p2 GENE.S_Transcript_449713~~S_Transcript_449713.p2 ORF type:5prime_partial len:238 (+),score=44.65,UBN2_3|PF14244.2|5.2e-13,UBN2|PF14223.2|2.9e-13,UBN2_2|PF14227.2|1.3e-06 S_Transcript_449713:2-715(+)
TTCCTCTTGTTTATATGGTATCAGAGTGGTAACGCTTCTATAATTTCTACTGTGCATCTTTCCTCTCCTTCTGCCATGTCTGATTCAATTATTATCTCCAATTCTCTTGAACCTTCAAATCTCTTTGTTGTTGTTTCTCTCTCTCACATCCAAAAACTCACTTCTACTACCTATATATCCTGGAAAACACAACTTGAGGCTACCCTGATTGGGTATGATCTCCAAAAATTTATTGATGGCACCATGTCTGTGCCTCCCAAAACCATTGCTAATGGCACTAATGCTATTAAAACAATCTCAAATCCTGCCTACTCTACTTGGTTGCGTCAAGACAAACAATTACTGGGTGCCCTCGTTGGAACTCTCTCCTCTTCCATTGTTCCTCTCATCTCACAGTGCTCTACTACCTTTGATGCTTGGCAAACTCTCAACAAGACATATGCTAACCCTTCCAAGGGACATATTAAACAAATCAAAGATCACTTGAAAAATATAACCAAACGTTCAAGGTCTGTCTCTGACTTCATGAATGATATCAAGCGCTGTACTGATCAACTTGCTGCACTTGGTCGTCCCCTTGATCCAGAGGACATTGTTGATCGTGTTCTTGATCAATTGAATGATTCTGACTTTGATAGCATTATTGCTGCAGTTCAAAGTTGCGACTCACCTATCTCCTTTGATGAACTTCAACAAAGCCTTATATGGTCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_449713.p2 GENE.S_Transcript_449713~~S_Transcript_449713.p2 ORF type:5prime_partial len:238 (+),score=44.65,UBN2_3|PF14244.2|5.2e-13,UBN2|PF14223.2|2.9e-13,UBN2_2|PF14227.2|1.3e-06 S_Transcript_449713:2-715(+)
FLLFIWYQSGNASIISTVHLSSPSAMSDSIIISNSLEPSNLFVVVSLSHIQKLTSTTYISWKTQLEATLIGYDLQKFIDGTMSVPPKTIANGTNAIKTISNPAYSTWLRQDKQLLGALVGTLSSSIVPLISQCSTTFDAWQTLNKTYANPSKGHIKQIKDHLKNITKRSRSVSDFMNDIKRCTDQLAALGRPLDPEDIVDRVLDQLNDSDFDSIIAAVQSCDSPISFDELQQSLIWS*

Click here to download the sequence:
Link to NCBI Protein BLAST