Transcript Information: S_Transcript_44989.p1


Annotated TAIR IDAT1G61870.1
Annotated Gene Namepentatricopeptide repeat 336
Annotated Gene Symbol(s)PPR336
Annotation TypeOrtholog
Chromosome Positionchr1:22865326-22866552 | Reverse length=408
E-Value9.4E-172
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.396060546398
Replicate 218.559021488828
Replicate 318.168154404937
Condition 2: 8 Hour
Replicate 129.368713712181
Replicate 228.478308566203
Replicate 329.408464685781
Condition 3: 24 Hour
Replicate 112.467303232845
Replicate 211.753688882026
Replicate 313.080415088509


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_44989.p1 GENE.S_Transcript_44989~~S_Transcript_44989.p1 ORF type:complete len:403 (+),score=70.91,PPR_2|PF13041.2|6.9e+03,PPR_2|PF13041.2|0.72,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|9.9e-08,PPR_2|PF13041.2|7.9e-11,PPR_2|PF13041.2|6.5e-08,PPR_2|PF13041.2|0.34,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.78,PPR|PF01535.16|46,PPR|PF01535.16|0.0043,PPR|PF01535.16|0.017,PPR|PF01535.16|0.0011,PPR|PF01535.16|8.7e-07,PPR|PF01535.16|29,PPR|PF01535.16|19,PPR_1|PF12854.3|56,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|0.41,PPR_1|PF12854.3|0.0019,PPR_1|PF12854.3|4.6e-09,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|1.7e+02,PPR_3|PF13812.2|5.4e+03,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|20,PPR_3|PF13812.2|0.00098,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|71,PPR_3|PF13812.2|4.1e+03 S_Transcript_44989:180-1388(+)
ATGGCCTTGTTAAACAGACTTCGATCTCGACACCTTCTCAATCTTCAACAACATCTTCGAACCTTCTTATCGACATCAATACTAAACCCAGATGGGAAAGGAGTATTATCAAGCAAAGAGAAAACAAGGGCAGCTCTATCTCTACTTAAAACTGAGAAAAACCCAGAACGCATTCTCGAGATTTGTAGGACAGCTTCACTTACCCCTGAAACCCATCTCGATAGAATCGCCTTTTCTGTTGCCATTTCTAAGCTTGCTGAGTCCAATTACTTTGAGGGTATTCGTGGGTTTCTTGAGGAGCTCAAGACCCGACCCGATTTGAGAAATAAGCGCTTTTTTACTCATTCAATCATCCTTTATGGTCAAGCTGGGATGATAAACAATGCTATCACTACTTTTGAGCACATGGAGCAACTGGGCATTCATAGGACTGTACAATCTCTGAATGCTTTGTTGTTTGCTTGTATCTTAGCTAAAAAGTACGATGAGGTCAAGAGGATTTTTACGGATTTTCCCAAAATGTATAACATTGAGCCTGATATCGATACTTACAATACTGTAATTAAGGCTTTTAGTGAGGCCGGTGAGTCAAGTTCAGGATATTCAATTGTAGCTGAGATGGATAGGAAGAGGTGCAAGCCAAATGCAACAACGTTTGGGAATTTGATTGCTGGGTTTTATAAGGAGGAGAAGTTTGAGGATGTGGGGAAGGTTTTGAAATTGATGGAAGAGCATGGGCTGAAGCCAGGGCTTGGCACATATAATGTCAGGATCAAGAGCTTGTGTAAGTTGGGAAGGTCATTTGAAGCAAAGGCTTTGTTGGATGGGATCCTTGAGAGAGGGATGAAGCCAAATTCGAATACATATTGTGATTTGATCCATGGATTCTGTAGGGAAGGAAAGTTTGAGGATTCAAAGAAATTGTTTAAGAGTATGGTCAATCATGGATGTAAACCAGACTCCGATTGCTACTTCACTATAGTCCACTTTTTAAGTAAAGGTGGTGATTACGAGAGTGCGCTGCAAATCTGTAAGGAGAGTATGGAGAAAAATTGGGTTCCAAATTTTACTACCATGAAGTCTCTCGTGGAAGGTTTGGCGAGCATTTCAAAGGTTGAAGAGGCTAAGGGCCTAGTTGCGAAAATTAAGGAGCAGTTTCCCAAAAATGCTGATCTTTGGAAAGAAACGGAAGAGAGCTTGTCAAAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_44989.p1 GENE.S_Transcript_44989~~S_Transcript_44989.p1 ORF type:complete len:403 (+),score=70.91,PPR_2|PF13041.2|6.9e+03,PPR_2|PF13041.2|0.72,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|9.9e-08,PPR_2|PF13041.2|7.9e-11,PPR_2|PF13041.2|6.5e-08,PPR_2|PF13041.2|0.34,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.78,PPR|PF01535.16|46,PPR|PF01535.16|0.0043,PPR|PF01535.16|0.017,PPR|PF01535.16|0.0011,PPR|PF01535.16|8.7e-07,PPR|PF01535.16|29,PPR|PF01535.16|19,PPR_1|PF12854.3|56,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|0.41,PPR_1|PF12854.3|0.0019,PPR_1|PF12854.3|4.6e-09,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|1.7e+02,PPR_3|PF13812.2|5.4e+03,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|20,PPR_3|PF13812.2|0.00098,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|71,PPR_3|PF13812.2|4.1e+03 S_Transcript_44989:180-1388(+)
MALLNRLRSRHLLNLQQHLRTFLSTSILNPDGKGVLSSKEKTRAALSLLKTEKNPERILEICRTASLTPETHLDRIAFSVAISKLAESNYFEGIRGFLEELKTRPDLRNKRFFTHSIILYGQAGMINNAITTFEHMEQLGIHRTVQSLNALLFACILAKKYDEVKRIFTDFPKMYNIEPDIDTYNTVIKAFSEAGESSSGYSIVAEMDRKRCKPNATTFGNLIAGFYKEEKFEDVGKVLKLMEEHGLKPGLGTYNVRIKSLCKLGRSFEAKALLDGILERGMKPNSNTYCDLIHGFCREGKFEDSKKLFKSMVNHGCKPDSDCYFTIVHFLSKGGDYESALQICKESMEKNWVPNFTTMKSLVEGLASISKVEEAKGLVAKIKEQFPKNADLWKETEESLSK*

Click here to download the sequence:
Link to NCBI Protein BLAST