Transcript Information: S_Transcript_450827.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0003
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.13174753086723
Replicate 20.21844346096549
Replicate 30.18260134736238
Condition 2: 8 Hour
Replicate 10
Replicate 20.33225517781772
Replicate 30.31657199413339
Condition 3: 24 Hour
Replicate 10.64885792546319
Replicate 20.33659126103486
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_450827.p1 GENE.S_Transcript_450827~~S_Transcript_450827.p1 ORF type:3prime_partial len:202 (+),score=6.20,gag_pre-integrs|PF13976.2|4.1e-09 S_Transcript_450827:1240-1842(+)
ATGCATACTATGACCTTTAATGTGCCTGATGAACATTGGAACATGGATACCGGGGCCTCGTCTCACATGACAGTGAATCCAGGTACACTCTCCTCATATTTCAATTTGAGCAATTCTCATCATATTATTGTTGGCAATGGTCATAAAATCCCAATTCATGGTTATGGACATGCGACTCTATCCTCCCCTTCTCTCCCTTTCCAATTGAATAACGTTCTTCATGCCCCTCCTTTGGTCAAAAATTTAATTTCTGTTTGTAAATTCACCACCGAAAATAATGTTTCTATCGTGTTTGCCCCCTTTGGATTTTCTGTGAAGGACCTTTCGACAGGGACACCACTAATGCGATGTGATAGCGTCGGTGACCTATATCCTCTCAACAACATATCAAGTCATCTAGCTCTCTATTCCATCTTGTGGCATGATCATTTGGGACATCCAGGAGCAATTATTTTAAACTCCCTGAGGACTAGTAATTTCATCCACTTTTCTAATACGTCCAAGAACTCAGTTTGTAAATCCTGTGTTTTTGGAAAACATGTTAAGTTGCCTTTTTCTCCTTCTTATTCATATACTATGCCCTTTGATATAATACATAGTGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_450827.p1 GENE.S_Transcript_450827~~S_Transcript_450827.p1 ORF type:3prime_partial len:202 (+),score=6.20,gag_pre-integrs|PF13976.2|4.1e-09 S_Transcript_450827:1240-1842(+)
MHTMTFNVPDEHWNMDTGASSHMTVNPGTLSSYFNLSNSHHIIVGNGHKIPIHGYGHATLSSPSLPFQLNNVLHAPPLVKNLISVCKFTTENNVSIVFAPFGFSVKDLSTGTPLMRCDSVGDLYPLNNISSHLALYSILWHDHLGHPGAIILNSLRTSNFIHFSNTSKNSVCKSCVFGKHVKLPFSPSYSYTMPFDIIHSD

Click here to download the sequence:
Link to NCBI Protein BLAST