Transcript Information: S_Transcript_451444.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value5E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.17086999187917
Replicate 20.21248272447045
Replicate 30.23682486142665
Condition 2: 8 Hour
Replicate 10.2396111271588
Replicate 20.1795493470283
Replicate 30.20528906200624
Condition 3: 24 Hour
Replicate 10.14025607377589
Replicate 20.036378509753367
Replicate 30.080969644960244


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_451444.p1 GENE.S_Transcript_451444~~S_Transcript_451444.p1 ORF type:internal len:623 (+),score=57.38,UBN2|PF14223.2|2.3e-19,UBN2|PF14223.2|3.9e+03,rve|PF00665.22|9.3e-18,UBN2_3|PF14244.2|7e-16,UBN2_3|PF14244.2|6.1e+03,UBN2_2|PF14227.2|9.4e-12,gag_pre-integrs|PF13976.2|1.3e-07 S_Transcript_451444:1-1866(+)
AACCATGTTGAACCCACAAAACCCCTCCTTCTCATACAATTCAACAATGTTATTAAACTCACTGCCACAAACTACACAACATGGCAGCCTCAAATTAGATCAACTCTCATTGGGTATGATCTCTTTCACTTTGTTGATGGGTCAACTCCAACACCTAGTGCCGAAATTGCAGACACTGATGGCAAGATCAAAGCAAATCCTACCTACCAAACTTGGATGCGCCAAGATAAACTACTTTTTGGTGCCTTACTCGGCACTCTCTCACCCAATGTTGCTCCGCTCGTTTGTCATGCTACTTCATCCTCTCAAATTTGGCAAACCCTCGAGAAAACGTATGCCAATCCTTCTAGAGGTCACCTCCTTCAAATTAAAGCCAATCTCAACAACATCACCAAAACTAACCAAACCATCACTGAATACATGCAATCCATAAAATCATGCACTGACAAATTGGCTGCAATGGGAAAACCTATGGATCAAGAAGATGTTACTGCCAAAGTTCTTCATGGCCTTGACTATGATATCTACAAACCCGTCATTGATACCATCAATGGGCGGGACACACAAATCACCTTTGAAGAACTCCATGAAAAATTGCTCACTTTTGAACTCACCTACAAAAACAAAGCCACAAACCCACCACATGATTTCAACCCCACGGCACATGCTGCCTATAAACGCCAACCCACTCGTCCCTCCTACTCCAACTACAACTCTAATCCTTCATCTCCCATACTCCCCACACCCAATCCTACCACACACAACTCTCCTAAGCCATTCCTAGGCAAGTGCCAGTGGTGCCGCCTTCAAGGACATGTACTGTCTCAATGTCCCGGGTTCAAGAAGCTTCACCCCACTGTCACTGTGCCTTCCTTCAATCCACGGCCTACCCGAACCCATGCCCCCAATTACTATCCTCCTCAAGCCCATAGTGCACATGCCCAAACCTCTCATCTCCCAAAATCGTGGCTGCTTGACAGTGGCGCCAGTCATCACATCACGCATGACCTCAACACACTCTCTCTCCATGCACCTTATGACGGCTCGGATGAACTCATCATTGGTGATGGGTCTGCCCTCCCTATCACTCACATTGGTTCTTTCTCAATCTCTACTCCTTCCAAAACTATTTATTTTAATAATGTTCTATGTGTTCCCTCTATTTCTCGCAACATTATTTCTATCTCTCAACTTTGCAAAGACAACAATCTCTCTATTGAATTCTTACCCTCGTCTTTTTTGATAAAGGAAATTCCGACGGGCCACCCACTCCTTCAAGGGACACCTAGTGGTGGAATCTATGATTGGAACTCGTCTTCTCCCAGTGTCTTCTCCAGCGTCACCACAAATTACCATGAATGGCATCATAAGTTGGGCCATCCATCACCACCTGTTATTAGTTATCTTAGGTCTCAATTTTCTCTTCCTATTTCTACTGTTTCTCCAAATAATTACTGTAATTCTTGCCTAATTAATAAAAGTCACAAGTTACCTTTTTCTACATCTACCATAAGCTCTTCTGCCCCTCTTGATATTATATTCACTGATGTATGGACTTCTCCCATCCACTCACATGACAACTACAAGTACTATGTAATTTTTGTTGATCATTTTACAAAGTATATGTGGTTCTACCCTCTCAAAAATAAATCTGACACAGCATCCACATTATTACGCTTCCGTGCTCAAGTTGAAAAATTTTTTAACAAACCTATACTTCGCCTATTCTCTGATAATGGCGGAGAATACATCAAACTACACTCCACTCTTCTTGAGAATGGCATATCACATCTCACATCTCCTCCCCACACCCCTGAACACAATGGCTATGCTGAACGCCGGCATCGTCATATTGTTGAAACGGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_451444.p1 GENE.S_Transcript_451444~~S_Transcript_451444.p1 ORF type:internal len:623 (+),score=57.38,UBN2|PF14223.2|2.3e-19,UBN2|PF14223.2|3.9e+03,rve|PF00665.22|9.3e-18,UBN2_3|PF14244.2|7e-16,UBN2_3|PF14244.2|6.1e+03,UBN2_2|PF14227.2|9.4e-12,gag_pre-integrs|PF13976.2|1.3e-07 S_Transcript_451444:1-1866(+)
NHVEPTKPLLLIQFNNVIKLTATNYTTWQPQIRSTLIGYDLFHFVDGSTPTPSAEIADTDGKIKANPTYQTWMRQDKLLFGALLGTLSPNVAPLVCHATSSSQIWQTLEKTYANPSRGHLLQIKANLNNITKTNQTITEYMQSIKSCTDKLAAMGKPMDQEDVTAKVLHGLDYDIYKPVIDTINGRDTQITFEELHEKLLTFELTYKNKATNPPHDFNPTAHAAYKRQPTRPSYSNYNSNPSSPILPTPNPTTHNSPKPFLGKCQWCRLQGHVLSQCPGFKKLHPTVTVPSFNPRPTRTHAPNYYPPQAHSAHAQTSHLPKSWLLDSGASHHITHDLNTLSLHAPYDGSDELIIGDGSALPITHIGSFSISTPSKTIYFNNVLCVPSISRNIISISQLCKDNNLSIEFLPSSFLIKEIPTGHPLLQGTPSGGIYDWNSSSPSVFSSVTTNYHEWHHKLGHPSPPVISYLRSQFSLPISTVSPNNYCNSCLINKSHKLPFSTSTISSSAPLDIIFTDVWTSPIHSHDNYKYYVIFVDHFTKYMWFYPLKNKSDTASTLLRFRAQVEKFFNKPILRLFSDNGGEYIKLHSTLLENGISHLTSPPHTPEHNGYAERRHRHIVETG

Click here to download the sequence:
Link to NCBI Protein BLAST