Transcript Information: S_Transcript_451591.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.70413158162281
Replicate 31.7657938803447
Condition 2: 8 Hour
Replicate 10.68059756331276
Replicate 20.71399516935298
Replicate 30.68029300866962
Condition 3: 24 Hour
Replicate 10.46478475511903
Replicate 20.96441751388712
Replicate 30.26831962133102


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_451591.p1 GENE.S_Transcript_451591~~S_Transcript_451591.p1 ORF type:5prime_partial len:94 (+),score=3.55 S_Transcript_451591:3-284(+)
ACAATCAGAGAAATTGTAGCCCTATTTTTACATTGTCTTGCTCATAACTTGAAGAATAGGACTATCAAAGCTATTTTTATTCGCTCAGGAGAGACAATTAGTCGCCAATTTCACACTGTGCTTCAGGCAGTTTTGAAGATTGGTAAATTTTATATGAAGCAAGTTGACTCTACAAATATAGTCCTTGGCTCCCTGCAATTGGTCTATATGCCTGTTCGTGCTTGCTCTCGCAACATAACGCCTTTCAAAAATATCAAGCATTGGACTTGTATAAAAGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_451591.p1 GENE.S_Transcript_451591~~S_Transcript_451591.p1 ORF type:5prime_partial len:94 (+),score=3.55 S_Transcript_451591:3-284(+)
TIREIVALFLHCLAHNLKNRTIKAIFIRSGETISRQFHTVLQAVLKIGKFYMKQVDSTNIVLGSLQLVYMPVRACSRNITPFKNIKHWTCIKA*

Click here to download the sequence:
Link to NCBI Protein BLAST