Transcript Information: S_Transcript_45390.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0745491750409
Replicate 21.2768505396678
Replicate 31.2659213193319
Condition 2: 8 Hour
Replicate 11.4637885682016
Replicate 21.0839657483582
Replicate 30.94673347370711
Condition 3: 24 Hour
Replicate 12.2638708328072
Replicate 21.0676088898683
Replicate 31.2560102866612


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_45390.p1 GENE.S_Transcript_45390~~S_Transcript_45390.p1 ORF type:complete len:743 (+),score=134.99,UBN2_3|PF14244.2|9.6e-41,rve|PF00665.22|1.4e+03,rve|PF00665.22|1e-09,Retrotrans_gag|PF03732.13|1.3e-06 S_Transcript_45390:756-2984(+)
ATGGCTGCTGAAGTTGCAACTTCAAGTCCAGTGATTGATGCTTCAAATCCTCTGTACTTACATCCTTCAGATCATCCTGGCTTACTTCTGGTTTCTAAGGTCTTCGATGGCAGTGGTTTTGGTGCCTGGAAAAAGTCTTTCACCATTGCACTTTCGGCCAAGAACAAATTGGGATTTGTCACAGGAAAGGTTCGAAAACCACTTTCTACTTCACCTGAGTTTGAATACTGGCAAAGGTGTAATGATATGGTAACAGCTTGGTTGTTAAATGTCCTGTCTCGAGAAATTGCAGAAAGTGTGATATATTCTGACTCAGCTCAATCAATTTGGGAGGAACTTAATGATAGATATGGTCAGGCCACAGGACCAAAATTGTATCAATTACAAAAAGATGTATGCTCTATGGCACAAGATGGCACAGACATTGCTACTTATTTCACCAGGTTTAAGGCATTGTGTGATGAATTCAATACTCTAAGTCCAGTTACCAATTGTACTTGTGGAGCAGCTCAAGGACTTCTCAAGTTTCAACAAGATCAAAAGGTCGTTCAATTCCTTATGGGACTCAATTGTGATTATAACACCACCAGAGGTAATATCCTCATGATGAAACCCCTGCCTAATTTGGCTTCTGCTTATGGCCTTCTCATTTCTGATGAGCAACAAAAACAAATTCAAGCTCCTTCTCATTTTCTCGATAATTCTGCATCAATGCTGGCTTCTGTTAATACTAATGCTTCTAGAGGTTTTAATAATGGGAACTTCAGACCTCAATTCTCTCCTAGGCCTACTCTATCACAATCAGCTTCCAAGAAAAGTATCATTTGCCATCACTGTAAGAAGCAAGGTCATCCTGCTAGCAAGTGTTACAGATTGATAGGCTTTCCTAAGGATTTTAAATTCACTAAGAACAAGAGCTTTGCAGCCAATGTGTGTGGAGATAATATATCTACTGGAGATATTCCTGGTTCTCCTCTGACTGATAAACTTGGTCATGACCAATCTCACACACTAACAACTGAGCAATACAATCAGTTTCTTTCTCTCATTAATTCAGTCAATCTCAACAATTCTTCTACTGCTATGGCACACTCAGCTGTCACACAATCTGCTGTTGGAGGTTCTCACATGCATGGTGCTTCTGTCAACTTTGCAGGTAAGGTTGCATGCTCCTCTCATAAGTTGTCAGGTTCTTGCATTTGTTGTTTTAGTCAAAACACTGTTGACTGTACTTGGATCTTAGATCCAGGTGCTACTGATCATATGTGTGCACATAAACAATTTTTCTGTGTCTTAACACCATTACCAAAGCCTTTTCATATCACCCTTCCCAATGGTCAGTTTGTTCTGGTTTCTCAAGCTGGAAATATTCAGCTCACACCAGACATTCTTCTTACTAATGTTCTTTTAGTTCCTAACTTCATGTACAATCTTCTCTCAATCCAAAAACTCTGTGAACAACTTCATTGTCAAGTGTCCTTTACTGATTCTAAATGTATCTTGCAGGGCCTTTCTCAGAAGAGGCCTCAGGTTCTTGGTGAAGCTCATGGTGGTCTATATCTGTTCCACATGAAGCCTCATGTTCAGAATCTCAATACTTCTAATAATGTTGTTTCTGTTTCTCCTGCTACTGTGTATATTGCTCCTGTTGATATGCCTGTTAATGATCTTCATATGCATAATGTGTCTGATTCACATGCTGTTTTGAATAAAAATTCTGTTTCTGATACAACTCATGTCTCTTGTACTTCTACTCTCACTGATACAATTATTTGGCATCAGGGATTAGGACATCTTCCCTTATACAAGCTTAAAACTCTTCCTTTTATTCAACATACTGTTTCTGAGATTGTTTGTGATGTCTGCCCGAGAGCAAGACAACAATCTCTTCCTTTTCCTAATAGCCACATCAAAACAGCTGCCCCTTTTGACCTTATTCATGTTGATCTTTGGGGGTCTTATCATACTCACACTTACAATGGACATGCATATTTTTTAACAATTGTGGACGACTTTACAAGGACTACATGGACACATCTTTTGGCTACAAAGAGTAATGCTTGGGGAGTGATAGTAGCTTTTATTCAGATGATTGAAACTCAGTTTTCATCAAAATTGAAGGTGCTTCGATCTGATAATGCATTAGAACTTGGTTCCAGCAATGCAACTATTGAGTATTTCAAAACCAAAGGCATTTTACATCAGACTAGCCTCAGTGGTACTCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_45390.p1 GENE.S_Transcript_45390~~S_Transcript_45390.p1 ORF type:complete len:743 (+),score=134.99,UBN2_3|PF14244.2|9.6e-41,rve|PF00665.22|1.4e+03,rve|PF00665.22|1e-09,Retrotrans_gag|PF03732.13|1.3e-06 S_Transcript_45390:756-2984(+)
MAAEVATSSPVIDASNPLYLHPSDHPGLLLVSKVFDGSGFGAWKKSFTIALSAKNKLGFVTGKVRKPLSTSPEFEYWQRCNDMVTAWLLNVLSREIAESVIYSDSAQSIWEELNDRYGQATGPKLYQLQKDVCSMAQDGTDIATYFTRFKALCDEFNTLSPVTNCTCGAAQGLLKFQQDQKVVQFLMGLNCDYNTTRGNILMMKPLPNLASAYGLLISDEQQKQIQAPSHFLDNSASMLASVNTNASRGFNNGNFRPQFSPRPTLSQSASKKSIICHHCKKQGHPASKCYRLIGFPKDFKFTKNKSFAANVCGDNISTGDIPGSPLTDKLGHDQSHTLTTEQYNQFLSLINSVNLNNSSTAMAHSAVTQSAVGGSHMHGASVNFAGKVACSSHKLSGSCICCFSQNTVDCTWILDPGATDHMCAHKQFFCVLTPLPKPFHITLPNGQFVLVSQAGNIQLTPDILLTNVLLVPNFMYNLLSIQKLCEQLHCQVSFTDSKCILQGLSQKRPQVLGEAHGGLYLFHMKPHVQNLNTSNNVVSVSPATVYIAPVDMPVNDLHMHNVSDSHAVLNKNSVSDTTHVSCTSTLTDTIIWHQGLGHLPLYKLKTLPFIQHTVSEIVCDVCPRARQQSLPFPNSHIKTAAPFDLIHVDLWGSYHTHTYNGHAYFLTIVDDFTRTTWTHLLATKSNAWGVIVAFIQMIETQFSSKLKVLRSDNALELGSSNATIEYFKTKGILHQTSLSGTP*

Click here to download the sequence:
Link to NCBI Protein BLAST