Transcript Information: S_Transcript_45592.p2


Annotated TAIR IDAT5G57250.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23195609-23198524 | Reverse length=971
E-Value3.9E-115
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.774121056561
Replicate 225.374755657373
Replicate 326.365019943993
Condition 2: 8 Hour
Replicate 128.417436981491
Replicate 225.988544724671
Replicate 327.813981285946
Condition 3: 24 Hour
Replicate 126.637640838415
Replicate 226.589414043382
Replicate 326.037537757706


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_45592.p2 GENE.S_Transcript_45592~~S_Transcript_45592.p2 ORF type:complete len:433 (+),score=82.66,PPR_2|PF13041.2|3.6,PPR_2|PF13041.2|8.7e+03,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|1.6e-13,PPR_2|PF13041.2|2.6e-06,PPR_2|PF13041.2|1.2e-14,PPR_2|PF13041.2|6.6e-06,PPR_2|PF13041.2|0.066,PPR_2|PF13041.2|5.2e+02,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|7e-08,PPR_1|PF12854.3|3e-06,PPR_1|PF12854.3|6.8e-11,PPR_1|PF12854.3|0.0089,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|25,PPR|PF01535.16|8.1e+02,PPR|PF01535.16|0.0019,PPR|PF01535.16|8.4e-07,PPR|PF01535.16|7.8e-06,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|0.0014,PPR|PF01535.16|0.00057,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.7e+02,PPR_3|PF13812.2|88,PPR_3|PF13812.2|67,PPR_3|PF13812.2|0.00097,PPR_3|PF13812.2|5.3e-05,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|1.1e+04 S_Transcript_45592:3296-4594(+)
ATGGCAAAAAGGGCAGGGCAGTGCTATTACAAAATTTTGCGAGATTTCATTAGGGACTATAATGATGGCAAAATCCAGCCTATTTTGACCACATTTATAAAGAGATATGGTTTAACTAAACCTACTCTGGGCAAGATGCTGGTGCATTACTTGTGTATGGAGACTAGTGTGGATGGTGCAATTGGCCTTATTAATGAGTTGAATAGAAACAATTTAAAGGTGAATTTTCCTGTTGATGTCATTGGGATGCTTACAGAACAGGGCAGATCTTTGGATGTGTATAAACTTGTGATGGGTGTACAAAATGATATTCCTACTATGGATGTGGTGGATTACTCAGTCATAGTAGATGGACTTTGCAAGGAAGGGTATGTTGATAAGGCCATAGAACTTTGTAATTTTTCCACAAAGAGGGGGGTTGCTCTTAATGTGGTTACTTATAACTCACTTTTCAATGGGTTATGCCGCCACAGTTGCCTTATTGAAGCATTCAGGCTCTTTGACTCATTGGAGAAGAACAATATCATTCCTTCTGATATTACATATGGAACACTGATTGATGCTTTAGTTAGAGAAGGCTTTCTGTTGGATGCCAGGCAGTTGTTTGAGAGGATGGTTCTCAAGAATATAAAACCAAATACCCATATCTACAATTCGCTGATTGACGGATACTGCAAGTTTGGGAACTTGGAAGAAGCATTGAGACTTGTTCATGATTTAGAGGACAGATCCCTCAAGCCAGACAAATTCACTGTGAGTGCTGTGATTTATGGCTTTTCCTTGGACGGCGACATGGAGGGGGCACTTCAATTTTTTGTTGATATGAAAAGAAAGAAGCTTTCCCCTGATTTCTTGGGCTTCTTGTATTTAGTAAGGGGTCTATGTGCGAAGGGCAGAATGGAAGAGGCCAGGAGCATTTTGAGAGAGATGCTTCAAGATGAATCTGTTGTTAAGCTGATTAATAGAGTTGATGTTGAGATTGAGAATGAGTCTGTAGAAGGTTTTCTTGTCCGCTTATGTGATCAGGGAAGCATTGAGGGTGTTCTTATCATTCTCAATGAAATTGGATCGATGTTTTTCCCTTGTAAACAAACTGTCTCTTGTACTGGACCAAAGCCAACTTTTGACTGTGAGGAAGACATGCAGCATTTTAGCTCTCTCGAGCCTTTATCCTTCATGCATCAGATGAACTTTGATGCTTTATACTCGCAAGTAGCATCCCTTTGCTCAATAGGTGATCTCAAGGGGGCTAACGCATTGGTGAAAGGAATGATCTCTAACTTTGTGAAAAAACAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_45592.p2 GENE.S_Transcript_45592~~S_Transcript_45592.p2 ORF type:complete len:433 (+),score=82.66,PPR_2|PF13041.2|3.6,PPR_2|PF13041.2|8.7e+03,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|1.6e-13,PPR_2|PF13041.2|2.6e-06,PPR_2|PF13041.2|1.2e-14,PPR_2|PF13041.2|6.6e-06,PPR_2|PF13041.2|0.066,PPR_2|PF13041.2|5.2e+02,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|7e-08,PPR_1|PF12854.3|3e-06,PPR_1|PF12854.3|6.8e-11,PPR_1|PF12854.3|0.0089,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|25,PPR|PF01535.16|8.1e+02,PPR|PF01535.16|0.0019,PPR|PF01535.16|8.4e-07,PPR|PF01535.16|7.8e-06,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|0.0014,PPR|PF01535.16|0.00057,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.7e+02,PPR_3|PF13812.2|88,PPR_3|PF13812.2|67,PPR_3|PF13812.2|0.00097,PPR_3|PF13812.2|5.3e-05,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|1.1e+04 S_Transcript_45592:3296-4594(+)
MAKRAGQCYYKILRDFIRDYNDGKIQPILTTFIKRYGLTKPTLGKMLVHYLCMETSVDGAIGLINELNRNNLKVNFPVDVIGMLTEQGRSLDVYKLVMGVQNDIPTMDVVDYSVIVDGLCKEGYVDKAIELCNFSTKRGVALNVVTYNSLFNGLCRHSCLIEAFRLFDSLEKNNIIPSDITYGTLIDALVREGFLLDARQLFERMVLKNIKPNTHIYNSLIDGYCKFGNLEEALRLVHDLEDRSLKPDKFTVSAVIYGFSLDGDMEGALQFFVDMKRKKLSPDFLGFLYLVRGLCAKGRMEEARSILREMLQDESVVKLINRVDVEIENESVEGFLVRLCDQGSIEGVLIILNEIGSMFFPCKQTVSCTGPKPTFDCEEDMQHFSSLEPLSFMHQMNFDALYSQVASLCSIGDLKGANALVKGMISNFVKKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST