Transcript Information: S_Transcript_45788.p1


Annotated TAIR IDAT2G18940.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:8203873-8206341 | Reverse length=822
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.973504410023
Replicate 220.764978407073
Replicate 322.825598070527
Condition 2: 8 Hour
Replicate 129.679925582551
Replicate 234.663205480612
Replicate 332.876560247212
Condition 3: 24 Hour
Replicate 116.884809945083
Replicate 221.010686496661
Replicate 320.415019471435


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_45788.p1 GENE.S_Transcript_45788~~S_Transcript_45788.p1 ORF type:complete len:850 (+),score=176.68,PPR_2|PF13041.2|4.2e+03,PPR_2|PF13041.2|6e-14,PPR_2|PF13041.2|8.1e-10,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|1.2e-11,PPR_2|PF13041.2|7e-10,PPR_2|PF13041.2|2e-14,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|4.9e-10,PPR_2|PF13041.2|6e-05,PPR_2|PF13041.2|2.4e-12,PPR_2|PF13041.2|60,PPR_2|PF13041.2|4.9e-11,PPR_2|PF13041.2|1.1e-12,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|1.2e-12,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|2.4e-07,PPR|PF01535.16|0.00054,PPR|PF01535.16|0.00011,PPR|PF01535.16|3.2e-08,PPR|PF01535.16|0.1,PPR|PF01535.16|6.5e-09,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|3.2e-06,PPR|PF01535.16|9.5e-05,PPR|PF01535.16|4.1,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|0.00075,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|0.0023,PPR|PF01535.16|0.00055,PPR_1|PF12854.3|0.00075,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|4.5e-05,PPR_1|PF12854.3|0.02,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|4.1e-05,PPR_1|PF12854.3|0.034,PPR_1|PF12854.3|3.9,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|3.3e-06,PPR_1|PF12854.3|1e-11,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|1.5e-06,PPR_3|PF13812.2|4.9e-05,PPR_3|PF13812.2|0.00038,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|7.5e-08,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.00066,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|9.8e-06,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|1.2e+02,ECSIT|PF06239.7|0.5,ECSIT|PF06239.7|2.9e+02,ECSIT|PF06239.7|0.92,ECSIT|PF06239.7|2.3e+02,ECSIT|PF06239.7|4.2e+02,ECSIT|PF06239.7|33,ECSIT|PF06239.7|2,ECSIT|PF06239.7|5.7e+02,TPR_12|PF13424.2|1.6e+04,TPR_12|PF13424.2|7.1,TPR_12|PF13424.2|1.6e+02,TPR_12|PF13424.2|1.7e+02,TPR_12|PF13424.2|94,TPR_12|PF13424.2|6.8e+02,TPR_12|PF13424.2|0.43,TPR_12|PF13424.2|2.6e+02,TPR_7|PF13176.2|2.5e+02,TPR_7|PF13176.2|2.4,TPR_7|PF13176.2|5.3e+03,TPR_7|PF13176.2|1.2e+03,TPR_7|PF13176.2|7.2,TPR_7|PF13176.2|1.4e+03 S_Transcript_45788:302-2851(+)
ATGGAAGGCACCATATTTCCAAACAGGCCAACATTGCCAATTCAATCAACAAAACCAACAACACAACAACCAAACATGGCCTTAAAGTTCAACTCTTCAACATTGCCCTTACCCCCACAACAACCACAAAACCCTCCTTCTCTTGCTATAGACTCTCTTCTTCAGCATCTTCTTCACCTTTCTTCAACTTCAAGTAATACCCATTTCCCTAAACTCATCAAATCCTCACAAAATTCCAGAACTACCCTTTTGCATTCACTTCCTATATCTTCACTTGACTCTATTACTCAGCCTATTGTGAATGGACATTCTTCAATTTCAAGCTCTCAACTTCATGTTAAAGATAAGGTTTTTATTCACTCATGTGATGATGGGTCACTTGATTTCTTGTCTGATAAAAGTAAGCTTATGTTGAATTCTATATTGGAAAGACCCTTATCTAGTTTGAATGCTTTCTTTGATTCTGTGAAGCTTGATTTGCTTGAAGTTGATTTGTTTAGTTTATTGAAAGGCTTAGATGTTTTGGGTAATTGGGAGAAGGCTGTTTTGTTGTTTGAATGGAGTTTTGTGAACTTGAGGGCTAGTCATAGGAAGAAAATGGATGATCAGGTTGTTGAGTTAATGGCTAGGATTTTAGGTAAGGAGTCACAGCATTCAATTGCAGCTAAATTGTTTGATGTTATTCCTCTTGAAGAGTACTCTTTAGATGTTAGAGCTTACACTTCTATTCTTCATGCCTATGCTCGAACGGGTAAGTATGAGAAGGCGGTCGCCATATTCGAGAACATGAAGGAGAAGGGTCTTTCCCCTACTTTGGTCACTTACAATGTAATGCTGGATGTTTATGGGAAAATGGGTAGGTCTTGGGATAAGGTTTTAGGTCTTTTAGATGAGATGACAAGTAAAGGGCTCAAGTTTGATGAGTTCACTTGCAGTACAGTGATTGCTGCTTGTGGAAGGGAGGGTTTGTTAGATGAAGCAAGGAAATTCTTTTCCCAGTTGAAGTCACAGGGTTATGTACCGGGCACTGTTACATATAACTCTTTGCTTCAAGTGTTTGGGAAAGCCGGGGTTTATTCTGAGGCTTTGAGTATCTTGAAAGAAATGGAGGAGAAAGGTTGTCCTGCTGATTCTGTTACTTATAATGAATTGGTTGCTACTTATGTGAGAGCAGGTTTCCTTGAAGAAGGAGCTGCTGTGATTGACACCATGGCTCAGAAAGGGATTATGCCAAATGCAATTACGTATACTACGATTATAGATGCCTATGGGAAAGCTGGAAAGGAAGAGAAGGCTCTGGCGTTGTTTAGGCATATGAAAGATTCAGGTTGTGTTCCTAATGTTTGTACATATAATGCTATCCTTGGGATGTTGGGGAAGAAGTCAAGATCAGAGGAGATGATAGAGATATTGTGTGATATGAAAGTATCTGGATGTCCTCCTAATCGCATCACATGGAACACGATGCTTGCCATGTGTGGTAAGACGGGCATGGAGAAGTATGTGAACCAAGTTTTTCAGGAGATGAAGCGATGTGGTTTTGAGCCTGATAGGGACACTTTCAACACTTTGATTAGTGCATATGGCCGGTGTGGATCAAGGATAGATGCTGCCAAAATGTTCAAGGAGATGATGAAAGCAGGGTTCAGCCCCTGTGTCACGACCTACAATGCATTTTTGAATGTACTAGCTAGGAAGGGAGATTGGAGAGCTGCAGAATCAATCATTCGGGACATGAAGATTAAGGGGTTTAAACCTAACGAGACTTCCTATTCCTTGATGCTTCAGTGTTATGCCAAAGGAGGAAATTTGAAGGGTATTAAAAACTTAGAGAAAGACATCTACCAAGGACATATCTTTCCGACATGGATGCTTCTAAGAAGCCTCGTTCTAGCAAATTTCAAGTGTAGAGCATTATCAGGGATGGACAGGGCATTTAAGGAGCTGCAAAAGAGTGGATACAAACCCGACTTGGTTGTATACAACTCGATGCTCTCGATCTTTGCTAGGAATAAAATGTACGACCGTGCACATGAAATACTGCACTTGATTCAGGAGAGCAAATTGCAGCCAGATCTTGTGACCTACAATAGCTTGATGGACATGTATGCGAGATCAGGTGAATGTTGGAAGGCAGAAGAGCTTCTACGAAAGCTCCTAAAAACTGGTGGAAAGCCAGATCTTGTATCATATAACACAGTGATAAAAGGGTTTTGCCGGCAAGGGCTTATGCAGGAAGCGATAAAGATTATGTCAGAGATGACAACTAGAGGGATTCGACCATGCATTGTCACCTTCAACACATTTGTGGCTGGCTATGCAGGGAGAGGGATGTTCTCCGAGGCTGATGAAGTAATAAGCTATATGATTCAGCACAATTGTAAGCCAAATGAGTTGACTTACAAGACTGTTGTGGATGGTTATTGTAAAGCAAAGAAGTACAGAGAAGCTCTTGGCTTTGTTTCCAAAATCAAGGAGATAGATCATTCTTTCGATGATGAATCTTTATATCGCCTTTCTTCTCGTATTAGGCAGGATGTGCAGTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_45788.p1 GENE.S_Transcript_45788~~S_Transcript_45788.p1 ORF type:complete len:850 (+),score=176.68,PPR_2|PF13041.2|4.2e+03,PPR_2|PF13041.2|6e-14,PPR_2|PF13041.2|8.1e-10,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|1.2e-11,PPR_2|PF13041.2|7e-10,PPR_2|PF13041.2|2e-14,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|4.9e-10,PPR_2|PF13041.2|6e-05,PPR_2|PF13041.2|2.4e-12,PPR_2|PF13041.2|60,PPR_2|PF13041.2|4.9e-11,PPR_2|PF13041.2|1.1e-12,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|1.2e-12,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|2.4e-07,PPR|PF01535.16|0.00054,PPR|PF01535.16|0.00011,PPR|PF01535.16|3.2e-08,PPR|PF01535.16|0.1,PPR|PF01535.16|6.5e-09,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|3.2e-06,PPR|PF01535.16|9.5e-05,PPR|PF01535.16|4.1,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|0.00075,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|0.0023,PPR|PF01535.16|0.00055,PPR_1|PF12854.3|0.00075,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|4.5e-05,PPR_1|PF12854.3|0.02,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|4.1e-05,PPR_1|PF12854.3|0.034,PPR_1|PF12854.3|3.9,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|3.3e-06,PPR_1|PF12854.3|1e-11,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|1.5e-06,PPR_3|PF13812.2|4.9e-05,PPR_3|PF13812.2|0.00038,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|7.5e-08,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.00066,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|9.8e-06,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|1.2e+02,ECSIT|PF06239.7|0.5,ECSIT|PF06239.7|2.9e+02,ECSIT|PF06239.7|0.92,ECSIT|PF06239.7|2.3e+02,ECSIT|PF06239.7|4.2e+02,ECSIT|PF06239.7|33,ECSIT|PF06239.7|2,ECSIT|PF06239.7|5.7e+02,TPR_12|PF13424.2|1.6e+04,TPR_12|PF13424.2|7.1,TPR_12|PF13424.2|1.6e+02,TPR_12|PF13424.2|1.7e+02,TPR_12|PF13424.2|94,TPR_12|PF13424.2|6.8e+02,TPR_12|PF13424.2|0.43,TPR_12|PF13424.2|2.6e+02,TPR_7|PF13176.2|2.5e+02,TPR_7|PF13176.2|2.4,TPR_7|PF13176.2|5.3e+03,TPR_7|PF13176.2|1.2e+03,TPR_7|PF13176.2|7.2,TPR_7|PF13176.2|1.4e+03 S_Transcript_45788:302-2851(+)
MEGTIFPNRPTLPIQSTKPTTQQPNMALKFNSSTLPLPPQQPQNPPSLAIDSLLQHLLHLSSTSSNTHFPKLIKSSQNSRTTLLHSLPISSLDSITQPIVNGHSSISSSQLHVKDKVFIHSCDDGSLDFLSDKSKLMLNSILERPLSSLNAFFDSVKLDLLEVDLFSLLKGLDVLGNWEKAVLLFEWSFVNLRASHRKKMDDQVVELMARILGKESQHSIAAKLFDVIPLEEYSLDVRAYTSILHAYARTGKYEKAVAIFENMKEKGLSPTLVTYNVMLDVYGKMGRSWDKVLGLLDEMTSKGLKFDEFTCSTVIAACGREGLLDEARKFFSQLKSQGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEEKGCPADSVTYNELVATYVRAGFLEEGAAVIDTMAQKGIMPNAITYTTIIDAYGKAGKEEKALALFRHMKDSGCVPNVCTYNAILGMLGKKSRSEEMIEILCDMKVSGCPPNRITWNTMLAMCGKTGMEKYVNQVFQEMKRCGFEPDRDTFNTLISAYGRCGSRIDAAKMFKEMMKAGFSPCVTTYNAFLNVLARKGDWRAAESIIRDMKIKGFKPNETSYSLMLQCYAKGGNLKGIKNLEKDIYQGHIFPTWMLLRSLVLANFKCRALSGMDRAFKELQKSGYKPDLVVYNSMLSIFARNKMYDRAHEILHLIQESKLQPDLVTYNSLMDMYARSGECWKAEELLRKLLKTGGKPDLVSYNTVIKGFCRQGLMQEAIKIMSEMTTRGIRPCIVTFNTFVAGYAGRGMFSEADEVISYMIQHNCKPNELTYKTVVDGYCKAKKYREALGFVSKIKEIDHSFDDESLYRLSSRIRQDVQF*

Click here to download the sequence:
Link to NCBI Protein BLAST