Transcript Information: S_Transcript_45828.p1


Annotated TAIR IDAT1G03750.1
Annotated Gene Nameswitch 2
Annotated Gene Symbol(s)CHR9
Annotation TypeOrtholog
Chromosome Positionchr1:937920-941068 | Forward length=862
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1820430512427
Replicate 24.6550061483987
Replicate 34.6005506494256
Condition 2: 8 Hour
Replicate 16.069534167184
Replicate 26.0723589164972
Replicate 36.4416022982087
Condition 3: 24 Hour
Replicate 14.6810464622702
Replicate 24.1342777161249
Replicate 33.9357475884906


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_45828.p1 GENE.S_Transcript_45828~~S_Transcript_45828.p1 ORF type:complete len:910 (+),score=185.08,SNF2_N|PF00176.19|3.5e-54,Helicase_C|PF00271.27|1e-18,Helicase_C|PF00271.27|5.6e+03,ResIII|PF04851.11|1.1e-06,ResIII|PF04851.11|7e+03 S_Transcript_45828:311-3040(+)
ATGTCGTTGAACGCTTTCAAAGCAACTCTAAAACAATGCTCCCATGTCCCATCTTCCACTTCTTCCACCTCAACCTCCACTTCCTCAGTATTATCCCAAACTCAACCCTCTTCAATTTTCAGTCATAACTTCACCCGCAGAATACCCCCTAAAACCTCCATCTCTAAACAGCTCCTTCGCCTTCAAAGCTCCATCTCTCCTCCCCTCAAATTACGGCCCAACCCACCACCACCACCACCACCAGTACCATCAGAGAGCAAGGAAATCAACAAATTGAGGGAAGAGAAGAAGAGGCTTCCTGAAGAAGAACAAGAAGATGATGATGATGATGATGATGAAGATGAAGTTGAGCATAAGGGTTTTGGCAGACCCAGATTGGATGTTTTCCAATTTGGCGAAACTGGGCCTTATGAGCCCCTTGTTTTGTCTTCACCTGGCGAAATTCCGGTGATTCAGGTTCCTGCTTCAATCAATTGTAGGCTTCTTGAGCATCAAAGAGAGGGTGTGAAATTTCTATATCGGTTGTACAAGAATAACCATGGAGGCATTCTTGGAGATGACATGGGTCTGGGGAAGACCATTCAAACAATTGCCTTCTTGGCTGCTGTTTATGGGAAAGACGGAGAACCTACAGTGGTGGACAAACCTCCAGTTCAGAAGAAAGCTCTTGTGTTGATTATATGTCCAGCATCAGTTCTGCAAAATTGGGAGGATGAATTCTCTAATTGGGCCACGTTCCATGTCTCTATATACCAGGGTCCAAATCGTGACTTAATTCTTGATAAAGCAGAAGCTCAGGGACTTGAGGTGATGATAACAAGCTTTGATTCATTCAGGATCTACGGAAGTACAATATCAGAAGTTACATGGGACATTGTAATCGTTGATGAGGCACATCGACTGAAGAATGAGAAGTCAAAGCTGTATATTGCATGTCTGGGTATACAAACTACGAAAAGATATGGTCTAACGGGGACAGTAATGCAGAATAAAATCATGGAACTTTTCAATCTCCTTGATTGGGTCGCTCCAGGATCTATGGGTACCAGAGAACATTTCCGGGAGTTTTATGAAGAACCTCTGAAGCTTGGGCAGAGGTCTAGTGCTCCTGAAAGATTTGTCCAAATTGCTGATGAGCGTAAACAACATCTTGCTTCTGTTCTTCAAAAATATGTATTAAGGAGGACAAAGGAAGAGACTATTGGGAATCTTATGATGGGAAAAGAAGATAATGTCGTCTTTTGTGAAATGAGTGATCTGCAAAAACGAGCCTACAGGAGGATGTTGCAATTACCAGAGATCCAATGCCTTATAAATAAGGACCTTCCATGCCCATGTGGAAGTCCGCTTCCTCAAAGTGAATGTCATAATAGGACAGTAGAGGATGGAATCATATGGAAATACCTTCACAGAGATAGCCCTGATGGATGTAATTGGTGCCCTTTCTGCCTTATTCTTCCCTGCATTCTCAAACTTCAGCAGATTAGCAATCATCTTGAGCTTATTAAACCTAATCCAAAAGATGACCCTGAAAAGCAAAAGAAAGATGGTGAACTGGCCCAAGAAGTTTTTGGTGCTGATATTGATTTGGTAGGGGGGAATGCTCAAAATGAAGACTTTATGCTCCTAAGTGATGTTAAGCATTGCGGCAAAATGAGGGCCCTTGAGAGATTAATGTCTTCTTGGATTTCACTTGGTGACAAAGTTCTTTTGTTCAGTTATTCTGTGAGGTTACTAGATATTTTGGAAAAGTTTCTCATACGCAAAGGATACTGCTTCTCTAGACTTGATGGCTCCACACCCACTGGTTCACGCCAGACTCTTGTTAATGAGTTTAACTCCAGTGCAAGCAAGCAGGTCTTCCTTGTTTCTACTCGAGCTGGTGGTCTTGGACTAAATCTAGTCAGTGCTAACCGTGTGGTCATATTTGATCCAAACTGGAATCCGTCACATGATCTACAGGCCCAAGACCGGTCATTTAGATTGGGCCAAAAAAGGCATGTCATTGTTTTTCGTCTTATTGCAGCAGGTTCAATTGAGGAACTTGTGTATACTCGCCAAGTGTACAAGCAGCAGTTGTCAAATATTGCAGTTTCTGGAAAGATGGAAAAGCGGTATTTCGAAGGTGTTCAGGATCACAAGCAATTCCAAGGCGAACTTTTTGGGATATGTAATCTGTTTCGTGACCTATCAAATAAGTTATTCACCAGTGAGATCATCGAATTGCACAATAAGCAAGGTCATGATTTGTTGGATCAAAGAAATAAACATAAAAAGGCAAATAATCTGGGCTTTCATTTTGTTCCATCAACAGAAGCAAGCACATCATATTTATCAGATTCTGGTGTCAGTAAACCTGTTGGTTCAGAGAGAACTACGACCAACAAGCCGCTGCTTGAGGAGTTGGGCATCTTATATTCTCATCGCTATGAAGACATTGTCAACATCAGACCTGGATGTGAAATGAGTAGAACAGAAAAGCCTGGTCGCAAAGGTGATTCGGAGGAGCCCTACATCCCTCCTCCTAATATAGCCAAACCATATAATGGTAAGAAAAACAGAAATTCTTCATCTAGGGAAAACAAGAAGAGACAATTTATTCAGATTGCCCAGTTCATGGGCATGACAGAAGTTGAATTTAGTAAGTGGGTACTATCGGCCTCCCCTTGTAAACGAGAGCAAGTGCTTCGTGATTTCAAGAAGAGAAAGGAAAAGATAGCCAATGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_45828.p1 GENE.S_Transcript_45828~~S_Transcript_45828.p1 ORF type:complete len:910 (+),score=185.08,SNF2_N|PF00176.19|3.5e-54,Helicase_C|PF00271.27|1e-18,Helicase_C|PF00271.27|5.6e+03,ResIII|PF04851.11|1.1e-06,ResIII|PF04851.11|7e+03 S_Transcript_45828:311-3040(+)
MSLNAFKATLKQCSHVPSSTSSTSTSTSSVLSQTQPSSIFSHNFTRRIPPKTSISKQLLRLQSSISPPLKLRPNPPPPPPPVPSESKEINKLREEKKRLPEEEQEDDDDDDDEDEVEHKGFGRPRLDVFQFGETGPYEPLVLSSPGEIPVIQVPASINCRLLEHQREGVKFLYRLYKNNHGGILGDDMGLGKTIQTIAFLAAVYGKDGEPTVVDKPPVQKKALVLIICPASVLQNWEDEFSNWATFHVSIYQGPNRDLILDKAEAQGLEVMITSFDSFRIYGSTISEVTWDIVIVDEAHRLKNEKSKLYIACLGIQTTKRYGLTGTVMQNKIMELFNLLDWVAPGSMGTREHFREFYEEPLKLGQRSSAPERFVQIADERKQHLASVLQKYVLRRTKEETIGNLMMGKEDNVVFCEMSDLQKRAYRRMLQLPEIQCLINKDLPCPCGSPLPQSECHNRTVEDGIIWKYLHRDSPDGCNWCPFCLILPCILKLQQISNHLELIKPNPKDDPEKQKKDGELAQEVFGADIDLVGGNAQNEDFMLLSDVKHCGKMRALERLMSSWISLGDKVLLFSYSVRLLDILEKFLIRKGYCFSRLDGSTPTGSRQTLVNEFNSSASKQVFLVSTRAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRLGQKRHVIVFRLIAAGSIEELVYTRQVYKQQLSNIAVSGKMEKRYFEGVQDHKQFQGELFGICNLFRDLSNKLFTSEIIELHNKQGHDLLDQRNKHKKANNLGFHFVPSTEASTSYLSDSGVSKPVGSERTTTNKPLLEELGILYSHRYEDIVNIRPGCEMSRTEKPGRKGDSEEPYIPPPNIAKPYNGKKNRNSSSRENKKRQFIQIAQFMGMTEVEFSKWVLSASPCKREQVLRDFKKRKEKIANV*

Click here to download the sequence:
Link to NCBI Protein BLAST