Transcript Information: S_Transcript_46040.p2


Annotated TAIR ID
Annotated Gene Name
Annotated Gene Symbol(s)
Annotation Type
Chromosome Position
E-Value
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.25276934687417
Replicate 20.17961565447095
Replicate 30.12512032621167
Condition 2: 8 Hour
Replicate 10.28935400701673
Replicate 20.7285269570603
Replicate 30.31814697917883
Condition 3: 24 Hour
Replicate 10.32604303717305
Replicate 20.33826584442309
Replicate 30.41067100795304


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_46040.p2 GENE.S_Transcript_46040~~S_Transcript_46040.p2 ORF type:3prime_partial len:737 (-),score=58.79,Retrotrans_gag|PF03732.13|8.4e-16,Retrotrans_gag|PF03732.13|1.9e+03,RVT_1|PF00078.23|2.4e-11 S_Transcript_46040:3-2210(-)
ATGTACCTAAGGATGGCTGGGGACGAGATATGGTGCAGATACTTCCCGTCAACCCTAAAGGGGATCGCACAGAAGTGGTTTAACCATCTACCCCGAGGTAGCATCCACAACTTCTCCGAGCTCTCTGAGAAGTTCTGCAGCCACTTCGTGGCCAGTAAGCAGGAGAGAAAGACTAGTATCCAGCTGCAACGGATAGTCCAGGGGAAAGGAGAAACGTTGAGAAGCTACGTAAAGCGCTTCAACAACGAAGCTATCCAAATACCCAGCCTCTCTGATGAAGTCGCCTTCGCGGCCTTCATGAGTGGCCTTAGAAACAACGGGTTCAAGTTCACGCTCTGTCGAAAGCAAGTGAACACCTACTCGGAGGCTCTATCTCGGGCTGAGTCCTTTATACAAGCTACCGAGATCTGCTCTCCCGAGGAGGGAAGGAAGAGGAGGAACAAGGAGGCACTTGTGATCCAGGAACCCAGGCCCCAAAAAGCCCGGGTTCAGAAAAAGCCTCCCCCGCCAGTGCCCTTCACCGATGAGGACTCACCTTTCAAACTGGACTGTCGGAAGATGTGGCAAGAGCTAAAGGAACAACGCATCTTACCAACACCACCGCCCATCACCACCCCGGATCATTTCCGGAACAAAAAGAAGTTTTGCGAGTACCATAAGGATCACGGCCATATGACTCAGGACTACCAACAGCTAAAGCACGATTTGTTCGAGTTAGCCAAGGCCGGAAAGCTGACCAAGTACCTCCGGGAAGGGTACAAATTGGCCATACCCAAGCTTGCTCGGGGTGACGGGGTAGTGGACTCACACTCGGTCGACGGGGGAGAGACCCCTATGATCGGGGTGATCACCGGTGGGTCCGCATCTGGGGGCCCAACATTGAGGGGCTGCAAGGACTATGTCCGGAGTCTCTCCGCTACTCGTCAGGGAAGCTCGGCAGCGCCCCCTGACATGTTGTTCTGTGCAGCGGACCAGAGGGGGGTGGTCGGTCCACATGATGACCCCCTGGTGGTTGAGATAAAGATCGCTGATAAGATCGTGCCCCGCATTCTGGTCGACACGGGGAGCTCGGCCGACATCATTCATCTAAGCTGTCTGGACAAGCTGAGCTTCTGCAAGGAGCAGTTAATCCCGGTAAGTAATGCCGTGTACGGGTTCGGTGGAAATGCTGTCTACCCGGTGGGAACTGTGACTCTGCCTATTCGGGTGAATAGAGGTCCAGTAGCCAGACACCATACGGTCGAGTTCTTGGTGATTGACACTCCTTTGGCGTATAACGTCATCATAGGTCGGCCAACTTTGAACGCCATCAAAGCCGTCGTAGCAACTCACATGCTGCTCATGCAGTACGAGTCAAACGACGGGAAGGCGGGCAAGTTGTATGGCGACCAGCGAACTAGCAGGGAATGTTACCTTGCTGATTTGAAGGGATGGACGGCCAAGCCAGAGCTCGGTTCTAAGAGAAAAATAGATGAGCTCGGCCCCCAAATCATGATGATGGAACACCTGGATGCTCGGCTTGACAACGAGCCCCATCCAGAGCCGATGGACGAAACCGAGGAGGTCCAGCTTGACCGTGCTCGTCCCGACAGGACGGTCATTATGGGGAGAATGGAAGCATCTTTGGCTGAGCTCACCAAGCAGGTGATTTGTGAACACGCTGATGTGTTTGCCCACTCAGTCGAGGATATGCCAGGCATTGACCCCTCGGTGGCCGAGCACAGACTCAACATCAAGGCCAATGTCTCCCCAGCCCAGCAGAAGAAAAGGAACATGGGACCGGAAAGATCCCAAGCAGCAAATGAAGAAGTAGACAAGTTGTTGGAGGCCGGTTTCATCAGGGAGTGTCAATACCCGGGGTGGTTGTCCAACGTGGTCATGGTGCGAAAGGCAAACGGGTCGTGGAAGATGTGTGTAGACTTCACCGACCTAAACAAGGCCTGTCCGAAGGACCATCACCCCCTACCCCGGATAGACAGGCTGGTGGACTCGACAGCAAGCCATGCCATGCTCAGCTTCCTCGACGCCTTCTCGGGGTATCATCAGATACCTCTCCACCGGGAGGACCAGGAAAACACTGCTTTCATTGTTGACCGAGGAGTCTACTGCTACCAAGTTATGCCATTCGGATTAAAGAATGCGGGTGCTACATACCAGAGGATGGTTGATAGGATGTTTGAAGGACAAATCGGACGCAACATGGAGGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_46040.p2 GENE.S_Transcript_46040~~S_Transcript_46040.p2 ORF type:3prime_partial len:737 (-),score=58.79,Retrotrans_gag|PF03732.13|8.4e-16,Retrotrans_gag|PF03732.13|1.9e+03,RVT_1|PF00078.23|2.4e-11 S_Transcript_46040:3-2210(-)
MYLRMAGDEIWCRYFPSTLKGIAQKWFNHLPRGSIHNFSELSEKFCSHFVASKQERKTSIQLQRIVQGKGETLRSYVKRFNNEAIQIPSLSDEVAFAAFMSGLRNNGFKFTLCRKQVNTYSEALSRAESFIQATEICSPEEGRKRRNKEALVIQEPRPQKARVQKKPPPPVPFTDEDSPFKLDCRKMWQELKEQRILPTPPPITTPDHFRNKKKFCEYHKDHGHMTQDYQQLKHDLFELAKAGKLTKYLREGYKLAIPKLARGDGVVDSHSVDGGETPMIGVITGGSASGGPTLRGCKDYVRSLSATRQGSSAAPPDMLFCAADQRGVVGPHDDPLVVEIKIADKIVPRILVDTGSSADIIHLSCLDKLSFCKEQLIPVSNAVYGFGGNAVYPVGTVTLPIRVNRGPVARHHTVEFLVIDTPLAYNVIIGRPTLNAIKAVVATHMLLMQYESNDGKAGKLYGDQRTSRECYLADLKGWTAKPELGSKRKIDELGPQIMMMEHLDARLDNEPHPEPMDETEEVQLDRARPDRTVIMGRMEASLAELTKQVICEHADVFAHSVEDMPGIDPSVAEHRLNIKANVSPAQQKKRNMGPERSQAANEEVDKLLEAGFIRECQYPGWLSNVVMVRKANGSWKMCVDFTDLNKACPKDHHPLPRIDRLVDSTASHAMLSFLDAFSGYHQIPLHREDQENTAFIVDRGVYCYQVMPFGLKNAGATYQRMVDRMFEGQIGRNMEV

Click here to download the sequence:
Link to NCBI Protein BLAST