Transcript Information: S_Transcript_461973.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.9345535946042
Replicate 29.5585382551631
Replicate 312.412413658445
Condition 2: 8 Hour
Replicate 115.630871921822
Replicate 214.50817432222
Replicate 313.881437541119
Condition 3: 24 Hour
Replicate 112.916456995801
Replicate 213.585936094813
Replicate 312.645384660876


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_461973.p1 GENE.S_Transcript_461973~~S_Transcript_461973.p1 ORF type:internal len:367 (+),score=76.37,UBN2_3|PF14244.2|1.7e-32,Retrotrans_gag|PF03732.13|3.3e-10 S_Transcript_461973:1-1098(+)
AAGCTAGGTTTTGTTCAAGGTACTTGTCCTAAACCTTCTGTTGGATCTTCTCTTTTGCCACATTGGGAGAGATGCAATAATCTTGTCATAACCTGGATTTTACATTCTGTTGATCCTGAAATTGGACGAAGCATTTTGTATTATAATACTGCCTCAGAGATTTGGAATGAACTTGCTGATCGATATGGTCAGTCCAATGCTCCAAGAAAGTACCAAGCACATAAGCATATAAGTGAGATTGAACAAGCAAATAAGTCTGTCACTGAATATTATACTGCCTTGAAAACTTCTTGGGATGAATATTTGTCTCTAATTACTATCCCTACATGTACCTGTGGTGCTGGTAATGTGTTCTTGGGAATTCTTCTTGAACAACAAGTCTTGCAGTTTCTTTTGGGTCTTAATGATGACTATGTGCATACCAGAGGAAACATACTGATGATGCAACCCCTGCCTAATCTTAGCCAGGCTTACAGATATGTTTTTCAAGAAGAGAAACAAAGACAGTGTGGTAACTTTGTTACTCTAGGTTCTGATTCTATTGCTTTAGCAGCTCAGAAATCTTCTCCTAAATGGCCTAAGCATGGTAATTTTGGTTCTAGGAAAGAGAATTTTGCACCAACTCATGCACAGCATTACAATCAGGGTCTTATTCCTCCATTTAATTCCTCCAGACCAGTGTATGGTGTTTCTCCTACTGGGAGAAGATCAAAGAATTATTGTACTCATTGCAAAGTTTATGGACATAGCATTGAGAGATGTTATAAACTGCATGGATTTCCTCAGGACAAAGGGAAAAAATTAGCTAATTGTGCTCAAGGTGATTCAGTTCTTGATATTTCTGAGAATGACATTGGTTCTGGTTCTTCTGCTCATACTTTAACTCAGGAACAGATTCAACATTTGGTGTCTCTTGTGTCTCAACATCATCTGACACCTTCTACTTCTTCTGGTCCTTCTTTTACTCATGATCAGTCTGCTAATTCAGTTTTCTTGGCAGGTAAAGCACTTTGTCTTCTTTCTTCTAGTGTCATGATAAGCATAATTTATATGCTTATTTTCTTCACTATTTCGGGTAGTGGAGGTCATGGTATGAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_461973.p1 GENE.S_Transcript_461973~~S_Transcript_461973.p1 ORF type:internal len:367 (+),score=76.37,UBN2_3|PF14244.2|1.7e-32,Retrotrans_gag|PF03732.13|3.3e-10 S_Transcript_461973:1-1098(+)
KLGFVQGTCPKPSVGSSLLPHWERCNNLVITWILHSVDPEIGRSILYYNTASEIWNELADRYGQSNAPRKYQAHKHISEIEQANKSVTEYYTALKTSWDEYLSLITIPTCTCGAGNVFLGILLEQQVLQFLLGLNDDYVHTRGNILMMQPLPNLSQAYRYVFQEEKQRQCGNFVTLGSDSIALAAQKSSPKWPKHGNFGSRKENFAPTHAQHYNQGLIPPFNSSRPVYGVSPTGRRSKNYCTHCKVYGHSIERCYKLHGFPQDKGKKLANCAQGDSVLDISENDIGSGSSAHTLTQEQIQHLVSLVSQHHLTPSTSSGPSFTHDQSANSVFLAGKALCLLSSSVMISIIYMLIFFTISGSGGHGMK

Click here to download the sequence:
Link to NCBI Protein BLAST