Transcript Information: S_Transcript_46269.p1


Annotated TAIR IDAT3G09650.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)HCF152, CRM3
Annotation TypeHomolog
Chromosome Positionchr3:2958704-2961040 | Forward length=778
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5817184760963
Replicate 27.3542631858383
Replicate 35.7146506174537
Condition 2: 8 Hour
Replicate 16.4743751510545
Replicate 27.7373686218773
Replicate 36.6716267934214
Condition 3: 24 Hour
Replicate 110.802790583768
Replicate 26.98712187878
Replicate 38.2494636630192


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_46269.p1 GENE.S_Transcript_46269~~S_Transcript_46269.p1 ORF type:3prime_partial len:639 (+),score=112.53,PPR_2|PF13041.2|4.9e+03,PPR_2|PF13041.2|2e+03,PPR_2|PF13041.2|6.8e-11,PPR_2|PF13041.2|3.1e+02,PPR_2|PF13041.2|0.0013,PPR_2|PF13041.2|6.3e-15,PPR_2|PF13041.2|1.4e-12,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|0.03,PPR_2|PF13041.2|1.9e-10,PPR|PF01535.16|6.2e+02,PPR|PF01535.16|0.0047,PPR|PF01535.16|0.16,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.0038,PPR|PF01535.16|9.9e-07,PPR|PF01535.16|3e-06,PPR|PF01535.16|6.2e-05,PPR|PF01535.16|0.00049,PPR|PF01535.16|5.6e-09,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|4.4,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|9.8e-07,PPR_1|PF12854.3|3.5e-07,PPR_1|PF12854.3|8.2e-08,PPR_1|PF12854.3|0.00023,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|2.4e-08,PPR_1|PF12854.3|3.6e+03,PPR_3|PF13812.2|3.1e+03,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|0.44,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|2.1e-07,PPR_3|PF13812.2|0.089,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|0.00072,SPOB_a|PF14689.2|4.2e+03,SPOB_a|PF14689.2|49,SPOB_a|PF14689.2|0.16,SPOB_a|PF14689.2|1.5 S_Transcript_46269:118-2031(+)
ATGAATACCAAATTCCCAACCCCATCTTCTTCAACCTCAACTTCAACCTCCTTACCACTCACCTCTACCAGTTTCCCAGCTTTCCTCCGAGTAGTATCTGCATCTCCACCACTTTCAAATTCAATCTCCACTCACAGCCACAGCCACAGCAGCCGACCTCAATCATCCATCACCGCTACGACTACAAACCCAACTCCTCCTACTACTAAGCACCTTGATCAAACCCTGCTCTCTCTCCTTCAGCGCAGGCAAACTGAACAAGCTTGGCTCTTTTACTCCCAATTACCTCATCTCCCTAACCCCACTTGCCTTAGTCGTTTAGTCTCTCAACTTTCTTATCAAAATACTCCTCTCTCCTTCTCCCGTGTTCAATCCATTGTCTCTCGTCTCAGACATGAATCTCAACTTCACCGCCTTGATTCCAACTCTCTTGGCTTATTGGCTGTCTCTGCTCTTAAATTTGGTCATACCCTCTATGCCCTTTCCATTATTAAGTCTATGCTTCGCTCTAATTATCTTCCCTATGTTAAGGCTTGGAGTGCTCTAGTTAGCCGCCTTTCTGCTTCCCCTGATGATGCTCCTCTCGAGTCTATACGCCTCTTTGAGCTAATTGCCAACCGGGTTCAAACCCATGTCGACAATCCAGCCCTCGTGGCCCACTCCAAACCCGACACCGCCGCCTTCAATGCTGTCCTCAATGCCTGTGCCAATATGGGCGACATTGATAAGTTCCACCAACTGTTTGATCAAATGCCTGAGTTCCAAGTTATGCCTGATGCTCTTACTTATAATGTTATGATTAAGTTATGTGCTAGAGTTGATAGGAAGGACCTGCTTGTTTGTGTGTTGGAGTTGATGTTGAGTAAAGGGGTTGAGCCTTGTGTTACTACCTTGCATTCTCTTGTTGCTGCTTATGTTGGTTTCGGTGAGTTGGGCGTCGCGGAGCAGTTGGTCCAAGCATTGCGTGATGGGAGGACCGATGTGTGTAGGGTTCTGAGGGATGCAAATGCTGGTGAGGATGAGCTTGATGAGGATGTGATTGATCATAGTGAACAAGACAAGTGTGAAAATGATGTGTTTGAGAAGTTGCTTCCTAGTGTGATTCGTGTGAGTTCAGAGCCACCTCCATTATTGCCTAGATCATATTCGCCAAATTCTAGGATGTATACGACGTTGATGAAGGGATACATGAAAGCGGGAAGAGTAGCTGAAACAGTGAGGATGCTTGAGGCAATGAGGTGTCAGGAGGATAGTGCTAGCCATCCTGATCATGTCTCCTATACAACAGTGATTTCGGCTTTTGTCAAAGCAGGATCAATGGACAAGGCCAGGCAGGTCCTCGCTGAAATGACGAGAATCGGTGTGCCAGCTAATCGTATCACATATAATATTCTGCTCAAGGGTTATTGCCAGCAGTTGCAAATTGATAAAGCAAAGGAATTGATCAAGGAGATGGCTAATGATGTTGAGATTTCGCCTGATGTGGTGTCATACAATACATTGATTGATGGGTGCATATTGGTGGATGATAGTGCAGGAGCTCTCGCATTCTTCAATGAGATGAGAGCACGAGGAATTGCTCCGACAAAAATTAGTTACACCACTTTGATGAAGGCTTTTGCCTTGTCTGGGCAACCGAAATTGGTAAACAAGGTGTTTGATGAGATGCTGAAGGATCCAAGGGTAAAAGTTGATCAGGTTGCTTGGAATATGTTGATTGAAGGTTACTGCAAGATGGGTTTAATCGAGGAAGCCAAGAAGATTGTCGAGAGAATGAGGGAGCACGGGTTTCACCCTAATGTTGCCACCTCTGATGCACGGAAACGCGGGGGAGCGGCGTCTCCCGTACCGGAAACGCGGCGGGTACGGGAAACGCCGAGAAACGGCCAGAAACATCGGGGAAACGTTTCCCGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_46269.p1 GENE.S_Transcript_46269~~S_Transcript_46269.p1 ORF type:3prime_partial len:639 (+),score=112.53,PPR_2|PF13041.2|4.9e+03,PPR_2|PF13041.2|2e+03,PPR_2|PF13041.2|6.8e-11,PPR_2|PF13041.2|3.1e+02,PPR_2|PF13041.2|0.0013,PPR_2|PF13041.2|6.3e-15,PPR_2|PF13041.2|1.4e-12,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|0.03,PPR_2|PF13041.2|1.9e-10,PPR|PF01535.16|6.2e+02,PPR|PF01535.16|0.0047,PPR|PF01535.16|0.16,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.0038,PPR|PF01535.16|9.9e-07,PPR|PF01535.16|3e-06,PPR|PF01535.16|6.2e-05,PPR|PF01535.16|0.00049,PPR|PF01535.16|5.6e-09,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|4.4,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|9.8e-07,PPR_1|PF12854.3|3.5e-07,PPR_1|PF12854.3|8.2e-08,PPR_1|PF12854.3|0.00023,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|2.4e-08,PPR_1|PF12854.3|3.6e+03,PPR_3|PF13812.2|3.1e+03,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|0.44,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|2.1e-07,PPR_3|PF13812.2|0.089,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|0.00072,SPOB_a|PF14689.2|4.2e+03,SPOB_a|PF14689.2|49,SPOB_a|PF14689.2|0.16,SPOB_a|PF14689.2|1.5 S_Transcript_46269:118-2031(+)
MNTKFPTPSSSTSTSTSLPLTSTSFPAFLRVVSASPPLSNSISTHSHSHSSRPQSSITATTTNPTPPTTKHLDQTLLSLLQRRQTEQAWLFYSQLPHLPNPTCLSRLVSQLSYQNTPLSFSRVQSIVSRLRHESQLHRLDSNSLGLLAVSALKFGHTLYALSIIKSMLRSNYLPYVKAWSALVSRLSASPDDAPLESIRLFELIANRVQTHVDNPALVAHSKPDTAAFNAVLNACANMGDIDKFHQLFDQMPEFQVMPDALTYNVMIKLCARVDRKDLLVCVLELMLSKGVEPCVTTLHSLVAAYVGFGELGVAEQLVQALRDGRTDVCRVLRDANAGEDELDEDVIDHSEQDKCENDVFEKLLPSVIRVSSEPPPLLPRSYSPNSRMYTTLMKGYMKAGRVAETVRMLEAMRCQEDSASHPDHVSYTTVISAFVKAGSMDKARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELIKEMANDVEISPDVVSYNTLIDGCILVDDSAGALAFFNEMRARGIAPTKISYTTLMKAFALSGQPKLVNKVFDEMLKDPRVKVDQVAWNMLIEGYCKMGLIEEAKKIVERMREHGFHPNVATSDARKRGGAASPVPETRRVRETPRNGQKHRGNVSR

Click here to download the sequence:
Link to NCBI Protein BLAST