Transcript Information: S_Transcript_463545.p1


Annotated TAIR IDAT2G16190.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 77 Blast hits to 77 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 56; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:7020689-7021600 | Reverse length=303
E-Value3.7E-61
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.79953222594963
Replicate 20.094690083937832
Replicate 30.23746012124808
Condition 2: 8 Hour
Replicate 10.36610112132417
Replicate 20.19203303553413
Replicate 30.27445297345469
Condition 3: 24 Hour
Replicate 10.093754864766499
Replicate 20.09726957758089
Replicate 30.4329964704741


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_463545.p1 GENE.S_Transcript_463545~~S_Transcript_463545.p1 ORF type:5prime_partial len:233 (+),score=10.35 S_Transcript_463545:2-700(+)
AATAGTATGATTGATGATCTAAATGTTGGTCTTACTCTTGAAACTCCATCCATATTCATATCAACCAATTCAAGTCAGTCGTATCCATCGTCCCAAAATTATCTTAATCTTTCGAATTCCGAAATTTCATACCCACAACCACAACCACAACCTCCAGCACCCACACGAGCACGGAGAAACCCTACAAGGGGTGTGGCCAAGAGCGAGACGATCACCCCTCCATTTCCATGGGCTACAGATCGACGGGCCAAGGTTTATTCCGTCAAGTTTCTAACGGAAAGAGAGATCCACGTTATATCTGGGGAAGTTCAGTGCAAGAAATGTGAGAAGAGTTTCACCCTGGAATTTAACGTCGAAGAGAAGTTCAAAGAGGTTGCATGTTTTTTACTCAATAACCAATCCACCATGCACGAACGTGCTCCTCCACAGTGGATAAGTCCATCTCTTGTAAACTGCAGATTTTGTGGTCAGATTAACAGTTGCAAGCCTTTGATTGCGCCTAAGAAAAAATCCATCAATTGGTTGTTTTTATTGCTCGGACAATTTCTTGGATGTTGCACTCTCAAGCAACTTAAGTATTTCTGTAAGCATAATGATTGTCATCGTACAGGAGCCAAAGATCGTGTGCTTTATCTTGCTTATCTTGCTTTGTTGAAACAACTTCATCCCGAGGGTCCGTTTGATTATCATCACACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_463545.p1 GENE.S_Transcript_463545~~S_Transcript_463545.p1 ORF type:5prime_partial len:233 (+),score=10.35 S_Transcript_463545:2-700(+)
NSMIDDLNVGLTLETPSIFISTNSSQSYPSSQNYLNLSNSEISYPQPQPQPPAPTRARRNPTRGVAKSETITPPFPWATDRRAKVYSVKFLTEREIHVISGEVQCKKCEKSFTLEFNVEEKFKEVACFLLNNQSTMHERAPPQWISPSLVNCRFCGQINSCKPLIAPKKKSINWLFLLLGQFLGCCTLKQLKYFCKHNDCHRTGAKDRVLYLAYLALLKQLHPEGPFDYHHT*

Click here to download the sequence:
Link to NCBI Protein BLAST