Transcript Information: S_Transcript_46590.p1


Annotated TAIR IDAT2G32950.1
Annotated Gene NameTransducin/WD40 repeat-like superfamily protein
Annotated Gene Symbol(s)COP1, ATCOP1, DET340, FUS1, EMB168
Annotation TypeOrtholog
Chromosome Positionchr2:13978000-13983282 | Forward length=675
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.230398925827
Replicate 231.423815410782
Replicate 329.060399601762
Condition 2: 8 Hour
Replicate 111.873600602442
Replicate 212.809118385206
Replicate 311.632938913759
Condition 3: 24 Hour
Replicate 133.732083497306
Replicate 242.718067561096
Replicate 336.241770430695


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_46590.p1 GENE.S_Transcript_46590~~S_Transcript_46590.p1 ORF type:5prime_partial len:634 (+),score=104.77,WD40|PF00400.28|49,WD40|PF00400.28|4.7e+02,WD40|PF00400.28|0.0033,WD40|PF00400.28|1.1,WD40|PF00400.28|0.001,WD40|PF00400.28|55,WD40|PF00400.28|1.2e+03,zf-C3HC4_3|PF13920.2|4.8e-08,zf-C3HC4|PF00097.21|9.1e-08,zf-C3HC4_2|PF13923.2|1.1e-06,WD40_like|PF17005.1|3.6e+03,WD40_like|PF17005.1|2.3e+02,WD40_like|PF17005.1|4.9e-05 S_Transcript_46590:2-1903(+)
TCTGACGGTGATAGAGATTTGATGTGTCCGATTTGTATGCAGTTCATTAAAGACGCTTTTCTAACAGCTTGTGGTCATAGTTTCTGTTATATGTGTATTATCACTCATCTTCGTAACAAGAATGATTGTCCTTGTTGTGGTCGTCATCTTACCAGTAATCAGCTCTTCCCTAATTTCCTCCTCGATAAGCTACTGAAGAAGGCATCAGCTCGTCAGGTGTCGAAAAGTGCGTCTCCGATTGAGCAGTTTCGTCGTGCCTTACAGCAGGGTTATGAAGTATCAGTCAAGGAGTTAGATACCCTAATGTCGCTTCTTGCGGAGAAGAAGAAAAAGATGGAGCAAGAAGAGGCTGAGAGAAATATGCAGATTCTACTAGATTTCTTGCTATGTTTGAGAAAGCTGAAAGTCGATGAGCTCAGTGAGATTCAAACAGACCTCCAGTACATTAAGGAGGACATAAGCGCAGTGGAGAGGCATAGAATGGAGTTATATCGGGCAAGAGATAGGTATTCTGTAAAACTTCGAATGCTTGGTGATGATCCTACACCGAAATCATGGCCTTCAACAGTTGATAAGAGTAGTGGGGGCTTTTCCTCTGGTTCACGTAGCTCACTCGGAGGGTTGGCTGCAGGAAGTTTTCAGAACAAGAAGATGGATGGAAAGACTCAAGTAAACTCTCTTGGGCCCCCAAGAAAAGATGCTTTGTCCGGGTTGGACTCACAGTTCATTAGTCAGTCAGGTTTGGCTGTGATGAGGAAAAAAAGGATTCATGCACAGTTCAATGACCTGCAAGAATGTTACCTACAAAAGCGTCGTCAGTTGGCTAGTAAGCATCCCAGACAGGATGAAAGGGATGGAAACTTTATGCAGAGGGAAGGCTTTAGTGAAGGTCTTGCCGAGTTTCAATCTGTATTATCTACCTTAACTCGTTACAGTCGATTGAGAGTCATAGCCGAACTTAGACATGGGGATCCTTTTCATTCAACCAATATTGTTTCGAGTATTGAATTTGACCGTGATGATGAGTTATTTGCTACTGCTGGAGTTTCCCGGAGAATTAAAGTTTTTGACTTTTCCTCGGTTGTCAATGAGCCGGCAGATTCCCACTGCCCTGTTGTTGAGATGTCTACCTTGTCCAAGCTCAGTTGCCTAAGCTGGAATAAGTTTACAAAGAACCAAATAGCTAGTAGTGATTATGAAGGAATAGTTACTGTATGGGATGTAACGACACGGCAGAGTGTGATGGAGTATGAAGAGCATGAGAAACGGGCGTGGAGTGTTGATTTTTCACGCACCGAACCTTCTATGCTTGTATCTGGCAGTGATGATTGTAAGGTAAAAGTGTGGTGCACAAGGCAGGAAGCTAGTGTGCTTAACATTGACATGAAGGCAAATATATGTTGCGTCAAGTACAATCCTGGGTCTAGCTACTATGTTGCGGTTGGTTCTGCAGATCATCACATCCATTACTATGATTTGAGGAACGCCAGCCAGCCAGTTCATGTATTTGGTGGGCATAAGAAGGCGGTTTCGTACGTCAAATTTTTGTCAACTAACGAGCTTGCTTCGGCATCAACAGACAGCACATTGAGACTGTGGGATGTGAAGGACAGCGTACCTGTCCGTACTCTCAGAGGCCATACTAACGAGAAGAACTTTGTAGGATTGACAGTGAACAGCGAATACATTGCCTGTGGCAGTGAAACAAATGAAGTTTTTGTGTATCATAAGGAGATCTCCAAACCTGTAACATGGCATAAATTTGGCTCACCCGATGTTGAGGATGCTGATGAGGATGCAGGATCCTACTTCATCAGTGCTGTATCCTGGAAGAGTGATAGCCCGACATTATTGACTGCCAACAGTCAAGGAACCATTAAGGTGCTAGTGCTTGCTGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_46590.p1 GENE.S_Transcript_46590~~S_Transcript_46590.p1 ORF type:5prime_partial len:634 (+),score=104.77,WD40|PF00400.28|49,WD40|PF00400.28|4.7e+02,WD40|PF00400.28|0.0033,WD40|PF00400.28|1.1,WD40|PF00400.28|0.001,WD40|PF00400.28|55,WD40|PF00400.28|1.2e+03,zf-C3HC4_3|PF13920.2|4.8e-08,zf-C3HC4|PF00097.21|9.1e-08,zf-C3HC4_2|PF13923.2|1.1e-06,WD40_like|PF17005.1|3.6e+03,WD40_like|PF17005.1|2.3e+02,WD40_like|PF17005.1|4.9e-05 S_Transcript_46590:2-1903(+)
SDGDRDLMCPICMQFIKDAFLTACGHSFCYMCIITHLRNKNDCPCCGRHLTSNQLFPNFLLDKLLKKASARQVSKSASPIEQFRRALQQGYEVSVKELDTLMSLLAEKKKKMEQEEAERNMQILLDFLLCLRKLKVDELSEIQTDLQYIKEDISAVERHRMELYRARDRYSVKLRMLGDDPTPKSWPSTVDKSSGGFSSGSRSSLGGLAAGSFQNKKMDGKTQVNSLGPPRKDALSGLDSQFISQSGLAVMRKKRIHAQFNDLQECYLQKRRQLASKHPRQDERDGNFMQREGFSEGLAEFQSVLSTLTRYSRLRVIAELRHGDPFHSTNIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADSHCPVVEMSTLSKLSCLSWNKFTKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEASVLNIDMKANICCVKYNPGSSYYVAVGSADHHIHYYDLRNASQPVHVFGGHKKAVSYVKFLSTNELASASTDSTLRLWDVKDSVPVRTLRGHTNEKNFVGLTVNSEYIACGSETNEVFVYHKEISKPVTWHKFGSPDVEDADEDAGSYFISAVSWKSDSPTLLTANSQGTIKVLVLAA*

Click here to download the sequence:
Link to NCBI Protein BLAST