Transcript Information: S_Transcript_471242.p1


Annotated TAIR IDAT3G48210.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:17849435-17851396 | Forward length=315
E-Value4.8E-76
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.56027371021433
Replicate 20.85154626362338
Replicate 31.1648043842274
Condition 2: 8 Hour
Replicate 12.2447779281193
Replicate 21.6484520050325
Replicate 31.8698111934194
Condition 3: 24 Hour
Replicate 10.68983842601876
Replicate 20.71569931293729
Replicate 30.97348241563606


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_471242.p1 GENE.S_Transcript_471242~~S_Transcript_471242.p1 ORF type:5prime_partial len:285 (+),score=52.75,Spindle_Spc25|PF08234.8|1.9e-22 S_Transcript_471242:2-856(+)
GATTCTACTGTTGACTCCTTTACCAAGTCTTTGGAGTTAATCAGATCTCGAACAGAGCAAAGTGCTCATAATCAAGTGGAATTGGGAAAACTCAAAGCTCAATTGAGAGAAGTAGAGGATGAATTGGTCAAGGCTCTTGCAGTCAAGACACGGAGGGAGGCTAAGCGGATGAGCCTTACGGATTCTCTTTCTGAAACAAGAGTCAAAGTAGAAGAGCTTCATAAAATTGTAGAGGATCAAAGAGCTCGAACTGATGAATATGCAGCCATCCTATCCCGACAGTCAAAAGCTCTAGCAGAATCCAAAGAGAAGAGTAAGGAAACTTTTAAACGCCAGGAAGAAATGCAAGAGGCATTTACATGGTACAACAGGGTACTTGGTTTCCGAATTGATGGTGGGCATGGTGTGAAATTTACATTTGTTAACATCAACAGAAAATGTCCATCTGAGGAGTATTCTTTCACTGTTCGTCATTCAAATGATGTATACACGTTGCTTGATTGTTCTCCTCACTTGAATGGTACTGAGGAGTTGGTCACCGAGTTAAACAAAAGCAACGGTTTATTTAAGTTTGTTAGGATGATGAGAGAGAAGTTCCTCGCTGCAGCATCAGGATCAGTGTCTAACTTTATATACCAAGATCAAGATACTGCTAGTATCTCTTTATCAGCCCCAGTTTCCTCAATTTCAGTGGATAGCAGAATGGAATCGCCGCTCCCGCTTAGAGAATCCAATCGAAATATTAAGAAAGATAACCATGCAAAAGGGATCAAATCACCTATTTTCTCTCCTGTGTCTGCATCATCTCTGCGACGATCCCCTCGTTTTCTGGAAAAAAACCAGATAGAACATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_471242.p1 GENE.S_Transcript_471242~~S_Transcript_471242.p1 ORF type:5prime_partial len:285 (+),score=52.75,Spindle_Spc25|PF08234.8|1.9e-22 S_Transcript_471242:2-856(+)
DSTVDSFTKSLELIRSRTEQSAHNQVELGKLKAQLREVEDELVKALAVKTRREAKRMSLTDSLSETRVKVEELHKIVEDQRARTDEYAAILSRQSKALAESKEKSKETFKRQEEMQEAFTWYNRVLGFRIDGGHGVKFTFVNINRKCPSEEYSFTVRHSNDVYTLLDCSPHLNGTEELVTELNKSNGLFKFVRMMREKFLAAASGSVSNFIYQDQDTASISLSAPVSSISVDSRMESPLPLRESNRNIKKDNHAKGIKSPIFSPVSASSLRRSPRFLEKNQIEH*

Click here to download the sequence:
Link to NCBI Protein BLAST