Transcript Information: S_Transcript_471244.p1


Annotated TAIR IDAT3G48210.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:17849435-17851396 | Forward length=315
E-Value5E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.4860822143412
Replicate 21.3096633070671
Replicate 30.75792066096989
Condition 2: 8 Hour
Replicate 10.38950484597503
Replicate 20.91939103998877
Replicate 30.68132846225968
Condition 3: 24 Hour
Replicate 10
Replicate 20.93138951683619
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_471244.p1 GENE.S_Transcript_471244~~S_Transcript_471244.p1 ORF type:5prime_partial len:219 (+),score=48.09,Spindle_Spc25|PF08234.8|1.2e-22 S_Transcript_471244:2-658(+)
GATTCTACTGTTGACTCCTTTACCAAGTCTTTGGAGTTAATCAGATCTCGAACAGAGCAAAGTGCTCATAATCAAGTGGAATTGGGAAAACTCAAAGCTCAATTGAGAGAAGTAGAGGATGAATTGGTCAAGGCTCTTGCAGTCAAGACACGGAGGGAGGCTAAGCGGATGAGCCTTACGGATTCTCTTTCTGAAACAAGAGTCAAAGTAGAAGAGCTTCATAAAATTGTAGAGGATCAAAGAGCTCGAACTGATGAATATGCAGCCATCCTATCCCGACAGTCAAAAGCTCTAGCAGAATCCAAAGAGAAGAGTAAGGAAACTTTTAAACGCCAGGAAGAAATGCAAGAGGCATTTACATGGTACAACAGGGTACTTGGTTTCCGAATTGATGGTGGGCATGGTGTGAAATTTACATTTGTTAACATCAACAGAAAATGTCCATCTGAGGAGTATTCTTTCACTGTTCGTCATTCAAATGATGTATACACGTTGCTTGATTGTTCTCCTCACTTGAATGGTACTGAGGAGTTGGTCACCGAGTTAAACAAAAGCAACGGTTTATTTAAGTTTGTTAGGATGATGAGAGAGAAGTTCCTAGCTGCAGCATCAGGAAAAATTCCAGATAGAACATTGATGATGCTTGTAGGCTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_471244.p1 GENE.S_Transcript_471244~~S_Transcript_471244.p1 ORF type:5prime_partial len:219 (+),score=48.09,Spindle_Spc25|PF08234.8|1.2e-22 S_Transcript_471244:2-658(+)
DSTVDSFTKSLELIRSRTEQSAHNQVELGKLKAQLREVEDELVKALAVKTRREAKRMSLTDSLSETRVKVEELHKIVEDQRARTDEYAAILSRQSKALAESKEKSKETFKRQEEMQEAFTWYNRVLGFRIDGGHGVKFTFVNINRKCPSEEYSFTVRHSNDVYTLLDCSPHLNGTEELVTELNKSNGLFKFVRMMREKFLAAASGKIPDRTLMMLVGF*

Click here to download the sequence:
Link to NCBI Protein BLAST