Transcript Information: S_Transcript_471245.p1


Annotated TAIR IDAT3G48210.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:17849435-17851396 | Forward length=315
E-Value8E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7912596985218
Replicate 20.2121422072838
Replicate 30.88667000401926
Condition 2: 8 Hour
Replicate 12.2555701296968
Replicate 20.21511392922814
Replicate 30.81984029249928
Condition 3: 24 Hour
Replicate 11.260281739842
Replicate 20
Replicate 32.1826769196735


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_471245.p1 GENE.S_Transcript_471245~~S_Transcript_471245.p1 ORF type:5prime_partial len:104 (+),score=22.36 S_Transcript_471245:2-313(+)
GATTCTACTGTTGACTCCTTTACCAAGTCTTTGGAGTTAATCAGATCTCGAACAGAGCAAAGTGCTCATAATCAAGTGGAATTGGGAAAACTCAAAGCTCAATTGAGAGAAGTAGAGGATGAATTGGTCAAGGCTCTTGCAGTCAAGACACGGAGGGAGGCTAAGCGGATGAGCCTTACGGATTCTCTTTCTGAAACAAGAGTCAAAGTAGAAGAGCTTCATAAAATTGTAGAGGATCAAAGAGCTCGAACTGATGAATATGCAGCCATCCTATCCCGACAGTCAAAAGGTAAATTTTTCTTTCTCAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_471245.p1 GENE.S_Transcript_471245~~S_Transcript_471245.p1 ORF type:5prime_partial len:104 (+),score=22.36 S_Transcript_471245:2-313(+)
DSTVDSFTKSLELIRSRTEQSAHNQVELGKLKAQLREVEDELVKALAVKTRREAKRMSLTDSLSETRVKVEELHKIVEDQRARTDEYAAILSRQSKGKFFFLS*

Click here to download the sequence:
Link to NCBI Protein BLAST