Transcript Information: S_Transcript_472513.p1


Annotated TAIR IDAT5G52290.1
Annotated Gene Nameshortage in chiasmata 1
Annotated Gene Symbol(s)SHOC1
Annotation TypeHomolog
Chromosome Positionchr5:21230353-21236554 | Reverse length=1594
E-Value8E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.27064069052726
Replicate 20.22436735143235
Replicate 30.1875532483078
Condition 2: 8 Hour
Replicate 10
Replicate 20.22751032514976
Replicate 30.3612855526268
Condition 3: 24 Hour
Replicate 10.074050452510489
Replicate 20
Replicate 30.25649536683169


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_472513.p1 GENE.S_Transcript_472513~~S_Transcript_472513.p1 ORF type:5prime_partial len:295 (+),score=62.59 S_Transcript_472513:2-886(+)
GAGAAAATGTTCAGTGACACTGAAGATGTTACAATTGATCCTAACCTGAAGCAAAACGATGGCAGCGTACTTTTACTTGATTTTCTGTTATTAGAAGACCTTTTGAAGGGGTTGAACATTATAGAGAACAGGCTTGACATAGCATCTGGAGGAAGCTGCACACAAAAAGAGAAAAAAGAGGTAGGTGCTTCAAGCATGTTGTCAGATAATGACTGTGAAATAATAGAAAAGGGAGGAAAGCTAACTATTGGTGAATTTGAGAAGAAAGAATCAGGCATGTTGTTTGACGATGACTGTCAAATCATAGGAATGGGTGGAAAGCTAATTGATTTTGGATTTGGGAAGATAGAATCGGGCAAGTTGTTTGATGAGGATTGTCAAATTTTAGAAAAAGGAATTCTCAATGATGGTGAATTCAGAAAATCAGTTCCGTGTCTTGAATCTATGTCTGAATTTAATGATCTTGACTTTTTCTTGAACCCTACCAAAGCTACTGATGGTATGAAAATTGATCGTCAGGTCAAGGCACTGAATGCTAAATCTATGTATTCTGGTTGTCTTAACAAGAGTGAAGCAGCCTCTCTGAACAGTAGTCACACGCAGCAGTCAGATATCCGGTTTCATGCTGTTACATTGCCCGAAAATATCATCGCCCTTATTGATAATTTCTGCAGAAGTTACTTGACTGTATATAGGGATGATGCACAACTGAATGAAGCACAATCAGCCATTGGCAATATGAATGACACACACTTGCTTGGTCTTTCTGAAGAAAAGCTAATGGATCACATCAGCAGATCAACCAAAGAGAAATCTGGTATGGGTTATAAAGATGACAACGCCCTCACTTTCGTCACCTTGTGTGCCATTAAACGTATGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_472513.p1 GENE.S_Transcript_472513~~S_Transcript_472513.p1 ORF type:5prime_partial len:295 (+),score=62.59 S_Transcript_472513:2-886(+)
EKMFSDTEDVTIDPNLKQNDGSVLLLDFLLLEDLLKGLNIIENRLDIASGGSCTQKEKKEVGASSMLSDNDCEIIEKGGKLTIGEFEKKESGMLFDDDCQIIGMGGKLIDFGFGKIESGKLFDEDCQILEKGILNDGEFRKSVPCLESMSEFNDLDFFLNPTKATDGMKIDRQVKALNAKSMYSGCLNKSEAASLNSSHTQQSDIRFHAVTLPENIIALIDNFCRSYLTVYRDDAQLNEAQSAIGNMNDTHLLGLSEEKLMDHISRSTKEKSGMGYKDDNALTFVTLCAIKRMS*

Click here to download the sequence:
Link to NCBI Protein BLAST