Transcript Information: S_Transcript_473783.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.2081395241275
Replicate 30.057996025420128
Condition 2: 8 Hour
Replicate 10.3353048792002
Replicate 20
Replicate 30.26812386924505
Condition 3: 24 Hour
Replicate 10.06869460217168
Replicate 20.42761908634618
Replicate 30.15862921009507


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_473783.p1 GENE.S_Transcript_473783~~S_Transcript_473783.p1 ORF type:internal len:318 (-),score=58.91,UBN2_3|PF14244.2|9.7e-31,Retrotrans_gag|PF03732.13|9e-07,UBN2|PF14223.2|0.0074,UBN2|PF14223.2|1.6 S_Transcript_473783:3-953(-)
CTCTCTGCCAAGAACAAATTAGGTTTTGTTACAGGAAAGGTTCAGAAACCTCCTGATGCTTCTGAAAGCTTTAATCACTGGCAGAGATGCAATGATATGGTTACTGCCTGGCTATTAAATGTTTTAACAAGAGAAATAGCAGACAGTGTTATCTACTCTAATTCAGCTCAAGAAATTTGGCAAGAACTTGATTATCGTTATGGTCAAGCTACTGGTCCTAAATTGTATCAACTGCAGAAAGATATGTGTTCAATATCTCAAGAAAGTACAGACGTCGCATCTTACTTTGCTAAATTCAAGGCTGTATGTGATGAGTTTAATACATTGAGTCCAATGTCTGCTTGTACCTGTGGAGCTGCTCAACAGATTTTTAAATTTCAACAGGATCAGAAGGTGGTTCAATTCTTGATGGGACTCAATAGTGACTACAACATTGCCAGAGGTAACATTTTAATGATGAAGCCTTTACCAAGTCTGGCCTCTGCTTATGGCATGCTGATTTCTTATGAACACCAAAAACAAATTCAAGCTCCATCACATTTTCTGAATGAATCTGCTTCTATGAATGTTGCTGCAAATTCTCCTAACTCTCATGGTCGTGGTTATCCTCCGCATAATATCAGACCTCAATTTCCATCTAAATCTTCGATGTATCAACAAAATGCAAATCAAAATTTTAGGAAATCTGTGATTTGTAATCACTGCAAGAAGCCTGGTCACACTGCCAATAAATGCTATCGATTGATAGGTTTTCCTAAGGATTTTAAGTTCACGAAGCCAAAAGGCTTTGCTGCTAATGTGTATGGAGATGAGGCTGTGCATACTGATGCTTCGTTCTCAACTGGTTCTTCTGGAACTATATCTGATCCTCCTGCTAACTCTCACACGCTCACTACTGATCAGTACAATCAGTTCTTGTCTCTACTGAATTCTGTTAACATGAAGAGTTCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_473783.p1 GENE.S_Transcript_473783~~S_Transcript_473783.p1 ORF type:internal len:318 (-),score=58.91,UBN2_3|PF14244.2|9.7e-31,Retrotrans_gag|PF03732.13|9e-07,UBN2|PF14223.2|0.0074,UBN2|PF14223.2|1.6 S_Transcript_473783:3-953(-)
LSAKNKLGFVTGKVQKPPDASESFNHWQRCNDMVTAWLLNVLTREIADSVIYSNSAQEIWQELDYRYGQATGPKLYQLQKDMCSISQESTDVASYFAKFKAVCDEFNTLSPMSACTCGAAQQIFKFQQDQKVVQFLMGLNSDYNIARGNILMMKPLPSLASAYGMLISYEHQKQIQAPSHFLNESASMNVAANSPNSHGRGYPPHNIRPQFPSKSSMYQQNANQNFRKSVICNHCKKPGHTANKCYRLIGFPKDFKFTKPKGFAANVYGDEAVHTDASFSTGSSGTISDPPANSHTLTTDQYNQFLSLLNSVNMKSS

Click here to download the sequence:
Link to NCBI Protein BLAST