Transcript Information: S_Transcript_47410.p1


Annotated TAIR IDATCG00170.1
Annotated Gene NameDNA-directed RNA polymerase family protein
Annotated Gene Symbol(s)RPOC2
Annotation TypeOrtholog
Chromosome PositionchrC:15938-20068 | Reverse length=1376
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.849821273058
Replicate 22.9741917377609
Replicate 36.7422035949187
Condition 2: 8 Hour
Replicate 16.4642081844775
Replicate 211.858954039033
Replicate 316.137054470184
Condition 3: 24 Hour
Replicate 12.8782672078239
Replicate 24.2462282161321
Replicate 311.295172970456


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_47410.p1 GENE.S_Transcript_47410~~S_Transcript_47410.p1 ORF type:complete len:1313 (+),score=16.06,RNA_pol_Rpb1_5|PF04998.13|5.1e-42,RNA_pol_Rpb1_5|PF04998.13|4.1e-06,RNA_pol_Rpb1_4|PF05000.13|9.7e-10 S_Transcript_47410:2468-6406(+)
ATGGAGGTACTTATGGCAGAACGGGCCAATTTGGTCTTTCACAATAAAGCGATAGATGGAACTGCCATGAAACGACTTATTAGCAGATTAATAGATCACTTTGGAATGGCATATACATCACACATCCTGGACCAAGTAAAGACTCTGGGCTTCCAGCAAGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAGCAAAGTTTAATTTTGGAAAAACACCATCATTATGGGAATGTACACGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTATTCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTATAATCCAGTGCATATAATGTCTTTTTCGGGAGCTAGAGGAAATGTGTCTCAGGTACATCAATTAGTAGGTATGAGAGGATTAATGTCGGATCCACAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGTGAGGGGCTCTCTTTAACAGAATATATCATTTCTTGCTACGGAGCCCGCAAAGGAGTTGTGGATACCGCTGTACGAACATCGGATGCTGGATATCTCACGCGCAGGCTTGTCGAAGTAGTTCAACATATTGTTGTACGTAGAACGGATTGTGGCACCGTTCGAGGTATTTCTGTAAGTCCTCAAAATGGTCTAATGCCGGAAAGAATTTTTATACAAACATTAATTGGTCGTGTATTAGCAGATGATATATATATGGGTTCGCGGTGTATGGCCACCCGAAATCAAGATATCGGGGTTGGACTTGTTAATCGATTCATAACCCTTCGAATCCAACCAATATCCATTCGAACTCCTTTTACATGTAGGAGTATGTCTTGGATCTGTCGATTATGTTATGGTCGGAGTCCTACTCACGGCGACCTGGTCGAATTGGGAGAAGCTGTAGGTATTATTGCGGGCCAATCCATTGGGGAACCCGGTACTCAACTAACATTAAGAACTTTTCATACGGGCGGAGTATTCACGGGGGGTACTGCAGAACATGTCCGAGCCCCTTCTAATGGAAAAATTAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCCTTTTTATGTTATATAGACTTATATGTCACTATTGAAAGTGAAGATATTCTACATAATGTAAATATTCCGCCAAAAAGTTTTCTTTTATTTCAAAATGATCAATATGTTGAATCTGAACAAGTGATTGCTGAAATTCGCGCGGGTACATCCACCTTGAATTTTAAGGAAAGGGTTCGAAAACATATTTATTCTGACTCAGAAGGAGAAATGCACTGGAGTACTGATGTGTACCATGTACCTGAATTTACATACGGTAATGTTCATCTCTTACCAAAAACAAGTCGTTTATGGATATTATCAGGAAGGCCGCGCAGATCTAGTATAGTCCCCCTTTCGCTCCACAAGGATCAAGATCAAACAAACGTCCATTCTCTTTCGTTCGAACAAAGATATATTTCTAACTCTTCAGTGACTAATGATCAAGTAAAAGATAAATTATTGGATCCTTCTAAAAATAAGGAAGATAGGATTCCGGATTATTTAGAACTTAATCGAGTAAGTCATTCGAATCTTATAGATTCTGCCAAAAATTTTGATTTATTGGCAAAAAGGCGAAGAAATAGATTCATCATTCCATTTCAATCAAGTCCAGAACAAGAAAAAGAATTAATGCCCCTTTCCGCTATCTCAATTGAAGTCCCCATAAATGGTATTTTCCGTAGAAATAGTATTTTTGCTTATTTCGACGATCCGCGATACCGAAGAAAGAGTTCAGGAATTACTAAATATGGTCCTATAGATATGCATTCAATCGTTAAAAAAGAGGATTTGATTGAATATAGAGGAGTCAAAGAATTTCGACCAAAATACCAAATGAAAGTAGATCGGTTTTTTTTCATTCCCGAGGAAGTGCATATCTTACCCGGATCTTGTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGATACGCAAATCACTTTAAATACAAGAAGCCGAGTAGGCGGAGTGGTCCGAGTGGAGAGGAAAAAAAAAAAGATTGAACTTCAAATTTTTTCTGGAGATATCCATTTTCCTGGGGAGATAGATAAGATATCACGACACAGTGGCATTTTGATACCACCCGGAAGTAAAAATTCCAAGGAATCAAAAAATTTGAAAAAATGGATCTATGTCCAACGGATCACCCCTACCAAGAAAAAGTATTTTGTTTTGGTCCGACCCGTAGTTACATATGAAATAACGGACGGTATAAATTTAGCAACACTTTTCCCTCAGGATCTGTTGCAGGAAAAGGATAATGTGCAACTTCGAGTTGTCAATTATATCCTTTATGGAAATGGCAAAGCCACTCGAGGAATTTCGGACACAAGTATTCAATTAGTTCGTACTTGTTTAGTATTGAATTGGAACCAAGATCAAAAAAGTTCTTCTATCGAAAAGGCAAGCGCTTCCCTTGTTGAAGTACGAACAAAAGGTATGATTCGAGATTTCCTACGGATCGATTTAGTGAAATCCACTAGTTCGTATATCGGGAAAAGAAATGATCCCTTATTTTTTTCTGATAATGGATCCGATCATATCAATATGAATCCATTTTATTCCATTTATTCAAAGACAAAACTTCAACAATCGTTTAACCAAAATCAAGAAACTGTTCGTACGTTGTTGGGTATAAATAAGGAATGTCAATCTTTTATAATTTTGTCATCATCCAATTGTTTTAGAATAGGTCCATTCACATTCAATGGTGGAAAATATCCAAAAGAATCAATTAAAAAAGATCACCTAATTCCAATTAAGAATTCATTGGGTCCTTTAGGAACAGCACTTCCAATTGCGAATTTTTTTTCATTTTACCATTTAATAACTCATAATTTAACTCATAATCAGATCTTGGTAACTAATTATTTCCAACTTGACAATTTAAAACAAACCTTTCAAGTACTTAAATTTCAATATTATTTAATGGATGAAAACGGGAGGATTTACAATCCCGATGCATCCAGTAACATTATTTTGAATCCATTCAAATTAGATTGGTATTTGCTTCACTACAATTTTTGTGAAGAGACATCCACAAAAATTCATCTTGGACAATTTATTTGTGAAAATGTATGTATAGCAAAAAATGGACCGTACTTAAAATCGGGTCAAGTTCTAATTGTTCAATTTGACTCTGTAGTAATAAGATCGGCTAAGCCTTATTTGGCCACCCCAGGGGCAACAGTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACGTTAGTTACATTTATATATGAAAAATCGAGGTCCGGTGATATAACGCAAGGCCTTCCAAAAGTAGAACAAGTGTTAGAAGTTCGTTCGATTGGTTCAATATCGATGAATTTAGAAAAGAGGATTAATGGTTGGAACGAACTTCTAACAAGAATTCTTGGAATTCCTTGGGGATTCTTGATTGGAGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAATAAAATCCAAAAGGTTTATCGATCCCAGGGGGTGCAGATCCATAATAGGCATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTGCGCGCGGAACGAACGGGGCGGGCTTTAGAAGAAGCAATCTGTTACCGAGCTATCTTATTGGGAATAACGAGAGCATCTCTAAATACTCAAAGTTTTATATCCGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCTGCTCTCCGAGGCTGTATGGACTGGTTGAAAGGATTAAAAGAAAATGTTGTTCTGGGGGGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_47410.p1 GENE.S_Transcript_47410~~S_Transcript_47410.p1 ORF type:complete len:1313 (+),score=16.06,RNA_pol_Rpb1_5|PF04998.13|5.1e-42,RNA_pol_Rpb1_5|PF04998.13|4.1e-06,RNA_pol_Rpb1_4|PF05000.13|9.7e-10 S_Transcript_47410:2468-6406(+)
MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYSTSEYLRQEMNPNFRMTDPYNPVHIMSFSGARGNVSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPQNGLMPERIFIQTLIGRVLADDIYMGSRCMATRNQDIGVGLVNRFITLRIQPISIRTPFTCRSMSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDILHNVNIPPKSFLLFQNDQYVESEQVIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHVPEFTYGNVHLLPKTSRLWILSGRPRRSSIVPLSLHKDQDQTNVHSLSFEQRYISNSSVTNDQVKDKLLDPSKNKEDRIPDYLELNRVSHSNLIDSAKNFDLLAKRRRNRFIIPFQSSPEQEKELMPLSAISIEVPINGIFRRNSIFAYFDDPRYRRKSSGITKYGPIDMHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILPGSCSIMVRNNSIIGVDTQITLNTRSRVGGVVRVERKKKKIELQIFSGDIHFPGEIDKISRHSGILIPPGSKNSKESKNLKKWIYVQRITPTKKKYFVLVRPVVTYEITDGINLATLFPQDLLQEKDNVQLRVVNYILYGNGKATRGISDTSIQLVRTCLVLNWNQDQKSSSIEKASASLVEVRTKGMIRDFLRIDLVKSTSSYIGKRNDPLFFSDNGSDHINMNPFYSIYSKTKLQQSFNQNQETVRTLLGINKECQSFIILSSSNCFRIGPFTFNGGKYPKESIKKDHLIPIKNSLGPLGTALPIANFFSFYHLITHNLTHNQILVTNYFQLDNLKQTFQVLKFQYYLMDENGRIYNPDASSNIILNPFKLDWYLLHYNFCEETSTKIHLGQFICENVCIAKNGPYLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIGSISMNLEKRINGWNELLTRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGCMDWLKGLKENVVLGG*

Click here to download the sequence:
Link to NCBI Protein BLAST