Transcript Information: S_Transcript_47410.p3


Annotated TAIR IDATCG00180.1
Annotated Gene NameDNA-directed RNA polymerase family protein
Annotated Gene Symbol(s)RPOC1
Annotation TypeOrtholog
Chromosome PositionchrC:20251-23084 | Reverse length=680
E-Value1.3E-305
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 130.353538275148
Replicate 23.8126940479576
Replicate 310.028768930253
Condition 2: 8 Hour
Replicate 18.8446319287648
Replicate 212.887009585096
Replicate 323.476901279219
Condition 3: 24 Hour
Replicate 14.7817141281254
Replicate 25.0654141080776
Replicate 314.063904944788


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_47410.p3 GENE.S_Transcript_47410~~S_Transcript_47410.p3 ORF type:complete len:434 (+),score=4.51,RNA_pol_Rpb1_2|PF00623.16|5.4e-08,RNA_pol_Rpb1_2|PF00623.16|3.7e-27,RNA_pol_Rpb1_1|PF04997.8|4.4e-32,RNA_pol_Rpb1_3|PF04983.14|3.1e-06 S_Transcript_47410:985-2286(+)
ATGGAATTAGCTAAGTATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTGTGTCTATTACCAGTTCTTCCTCCCGAATTGAGACCAATCATTCAGATAGATGGAGGTAAATTAATGAGTTCGGATATTAATGAACTCTATAGAAGAGTCATCTATCGGAACAATACTCTTACCGATCTATTAACAACAAGTAGATCTACGCCGGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGCGGACAACCGATGAGGGACGGTCATAATAAAGTTTACAAGTCATTTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTTTACTTGGTAAACGGGTCGATTATTCCGGTCGTTCCGTCATTGTCGTAGGCCCTTCACTTTCATTACATCGATGTGGATTGCCTCGTGAAATTGCAATAGAACTCTTCCAGACATTTGTAATTCGTGGTCTAATTAGAAAACATCTTGCTTCGAACATAGGAGTTGCTAAGAGTCAAATTCGGGAAAAGGCACCGATTGTATGGAAAATACTTCAGGAAGTTATCCAGGGGCATCCTGTATTGTTAAATAGAGCGCCTACTCTACATAGATTAGGCATCCAGGCATTCCAACCCATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAAGCTCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGGGATCCCATTTCCGTACCAACTCAAGATATGCTTATGGGACTTTATGTATTAACGAGCGGGAATCGTCGAGGTATTTGTGCAAATAGATATAATCCATGGAATCACAAAAACTATCAAAATGAAAGAATTGACGATAATAACTATAAGTATACAAAAGAACCCTTTTTTTGTAATTCTTATGATGCAATTGGAGCTTATCGTCAGAAAAGAATCAATTTAGATAGCCCTTTGTGGCTCCGGTGGAAACTGGATCAACGCGTTATTGCTTCAAGAGAAGCTCCCATCGAAGTTCACTATGAATCTTTGGGTACCTATCATGAGATTTATGGGGACTATCTAATAGTAAGAAGTGTAAAAAAAGAAATTCTTTCTATATATATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATGGAAGAAGCTATACAAGGATTTTGTCGAGCCTGCTCATATGGTACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_47410.p3 GENE.S_Transcript_47410~~S_Transcript_47410.p3 ORF type:complete len:434 (+),score=4.51,RNA_pol_Rpb1_2|PF00623.16|5.4e-08,RNA_pol_Rpb1_2|PF00623.16|3.7e-27,RNA_pol_Rpb1_1|PF04997.8|4.4e-32,RNA_pol_Rpb1_3|PF04983.14|3.1e-06 S_Transcript_47410:985-2286(+)
MELAKYFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRKHLASNIGVAKSQIREKAPIVWKILQEVIQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICANRYNPWNHKNYQNERIDDNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWKLDQRVIASREAPIEVHYESLGTYHEIYGDYLIVRSVKKEILSIYIRTTVGHISLYREMEEAIQGFCRACSYGT*

Click here to download the sequence:
Link to NCBI Protein BLAST