Transcript Information: S_Transcript_475540.p1


Annotated TAIR IDAT4G20520.1
Annotated Gene NameRNA binding;RNA-directed DNA polymerases
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:11045912-11047716 | Forward length=376
E-Value4E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.27915735561378
Replicate 20.15428524166094
Replicate 30.064485091201401
Condition 2: 8 Hour
Replicate 10
Replicate 20.1564464939841
Replicate 30.074530935681753
Condition 3: 24 Hour
Replicate 10.076380711505574
Replicate 20.15848819284159
Replicate 30.088188966451455


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_475540.p1 GENE.S_Transcript_475540~~S_Transcript_475540.p1 ORF type:5prime_partial len:286 (+),score=26.74,RVT_1|PF00078.23|1.1e-29 S_Transcript_475540:1-858(+)
GTCCCTGGACGTCAAATAGCAGATAATATTGTCATAGTTCAAGAAGCTCTTCACACAATGCGCTCGAAACAAGGGAACAAGGGATTTATGGCGATCAAAATTGACCTTGCCAAAGCTTACGATCGTTTGAGATGGAATTTTATAGAAGACACTCTGATAAATATGGGCTTACCTATATTTTTGAAAGAGATCATCATGATGTGCGTATCGTCACCTAGCTTTCGCATATTATGGAATGGGACCCCAACTCAACCCTTCTCTCCTACAAGGGGCATTAGACAAGGTGACCCTTTATCACCCTATCTATTTGTCTTATGCATGGAAAGATTAAGCCATTTGATTGAGGAATCTCTAGCGACGGGTATTTGGAAGCCAATTCGGTGTAGTAGAAATGACCCTCCCATCTCGCACTTATTTTTTGCGGATGATATAGTCTTATTTTCTGAAGCTTCGAGTGCACAAGCTGTGATCATAAAAGAGTGCTTGCAGCGTTTCTGTGAGGAATCTGGGGAGTTGGTATCTTTACCAAAGTCCCGCATATTTTTCTGTCCTAATGTGCCAGCTGATGTGAGCTCCTCAATATGTGACTATATGGGAATTTCAGCCACTGAAGATCTTGGTTTTTACCTCGGAATGCCTTCTATTCATGGCCGAGTCACAAAGAGCACCTTCCAATATATTATTGATAAATTCGACAAAAAACTAAGTGGATGGAAGGCTCATTGTCTTTCGTTGGCAGGTCGTGCAACTCTTTCTAAATCAGTACTTTCTACACTTGCATATTACTCCATGCAAACTGCCAAACTACCTAAAGGAGTATGTGATGAGGTGGATAGAAAAGTTCGTCGTTTTCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_475540.p1 GENE.S_Transcript_475540~~S_Transcript_475540.p1 ORF type:5prime_partial len:286 (+),score=26.74,RVT_1|PF00078.23|1.1e-29 S_Transcript_475540:1-858(+)
VPGRQIADNIVIVQEALHTMRSKQGNKGFMAIKIDLAKAYDRLRWNFIEDTLINMGLPIFLKEIIMMCVSSPSFRILWNGTPTQPFSPTRGIRQGDPLSPYLFVLCMERLSHLIEESLATGIWKPIRCSRNDPPISHLFFADDIVLFSEASSAQAVIIKECLQRFCEESGELVSLPKSRIFFCPNVPADVSSSICDYMGISATEDLGFYLGMPSIHGRVTKSTFQYIIDKFDKKLSGWKAHCLSLAGRATLSKSVLSTLAYYSMQTAKLPKGVCDEVDRKVRRFL*

Click here to download the sequence:
Link to NCBI Protein BLAST