Transcript Information: S_Transcript_47628.p1


Annotated TAIR IDAT1G20370.1
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7051846-7053588 | Reverse length=549
E-Value8E-77
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.7737494245118
Replicate 21.8644610893675
Replicate 31.8182979237353
Condition 2: 8 Hour
Replicate 11.6820026165626
Replicate 22.1426559260583
Replicate 31.5011160285198
Condition 3: 24 Hour
Replicate 12.2152557905955
Replicate 22.4898271872607
Replicate 31.4920082605843


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_47628.p1 GENE.S_Transcript_47628~~S_Transcript_47628.p1 ORF type:complete len:355 (+),score=83.47,PseudoU_synth_1|PF01416.16|4.5e-11 S_Transcript_47628:806-1870(+)
ATGGGTAATAAGAGGGATTGGCATGAAAAAGGTGTTTTTAAAGGTTTTGTTCAGTCCGGCATTTCGTCGAACAGTGAGAGCGCATCTTTGAATATTATTGAGAAAGAGAGGGATCAAATGCACTGTGATGTTTCTTTGGATGGTAATGGTAATGGGGTGGGAAATAATGTGGTTGTTGAAGGTTATGAGGTTTCAGCTCAGTGTGGCATTTCGTTGAAATGTGAGGCTGCATTGTTGAGTACTGAAGATGGTGAGAAGCAGAAGGAAGAGTGTGATGTTAATGTACGGAACAATGGTGCTGCTGCTAATTTAGATGCTAATGCTGTTAATTCTGAATCGATGGTCGTGGACGAGGTATGTGAAGGAGATTCAAATGGGTGTGGCAATGTAGAGGAGGAGGAGAAGGTGAAGGAAAGTAGTGACTTCAAGTATAGGGATGAAGAAAAAGAGAGGTTCAATAGAATACTAAAGTATTACGAGGGGACACATAACTTTCATAACTTTACCACTAGAACAAAGGCGGAAGATCCGTCTGCAAAACGATACATTGTGTCGTTTCAAGCAAACACTACTCTCACGGTTGAAGGGATCGATTTTATCAAGTGTGAGGTTGTTGGACAAAGTTTCATGCTTCAACAGATTCGGAAAATGATGGGGCTCGCAGTAGAGATAATGAGGAATTTCGCTCCTGAATCAATTTTTGAGAGAGCATTCAAACAGGATGTTCATATCAATGTGCCTACAGCCCCAGAGGTGGGCTTGTACTTGGACGAATGTCTCTTCACTTCGTATAACAATAAATGGAAAGCCTCGCATGAGGAACTATCCATGAAAGACTATGCTGAAGAGGCGGAAGAATTCAAATTGAAGTACATATACTCCCACGTTGCTAAAACTGAGCACAAGGAAGCAGCTGTCGCAGTTTGGCTACACTCCTTAAACCACCGGAACTACCCTGATCTTCAGCCTCAACCTGTGGATGGTGATACAGGGGTCGCCATTGAGAGCAAGAGCACTGAAGCTGAGACGCTAGCTGAAGGAGATTCAACAACTGTGCCTGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_47628.p1 GENE.S_Transcript_47628~~S_Transcript_47628.p1 ORF type:complete len:355 (+),score=83.47,PseudoU_synth_1|PF01416.16|4.5e-11 S_Transcript_47628:806-1870(+)
MGNKRDWHEKGVFKGFVQSGISSNSESASLNIIEKERDQMHCDVSLDGNGNGVGNNVVVEGYEVSAQCGISLKCEAALLSTEDGEKQKEECDVNVRNNGAAANLDANAVNSESMVVDEVCEGDSNGCGNVEEEEKVKESSDFKYRDEEKERFNRILKYYEGTHNFHNFTTRTKAEDPSAKRYIVSFQANTTLTVEGIDFIKCEVVGQSFMLQQIRKMMGLAVEIMRNFAPESIFERAFKQDVHINVPTAPEVGLYLDECLFTSYNNKWKASHEELSMKDYAEEAEEFKLKYIYSHVAKTEHKEAAVAVWLHSLNHRNYPDLQPQPVDGDTGVAIESKSTEAETLAEGDSTTVPA*

Click here to download the sequence:
Link to NCBI Protein BLAST