Transcript Information: S_Transcript_47696.p1


Annotated TAIR IDAT5G46190.1
Annotated Gene NameRNA-binding KH domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18723435-18725834 | Reverse length=644
E-Value2.4E-230
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 146.808076127472
Replicate 247.388885609067
Replicate 347.67832736725
Condition 2: 8 Hour
Replicate 154.650598336833
Replicate 252.332861367849
Replicate 351.74747569698
Condition 3: 24 Hour
Replicate 146.042833209275
Replicate 241.829671526763
Replicate 342.699055881973


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_47696.p1 GENE.S_Transcript_47696~~S_Transcript_47696.p1 ORF type:complete len:622 (+),score=151.37,KH_1|PF00013.25|8.4e-12,KH_1|PF00013.25|1.2e-13,KH_1|PF00013.25|4.3e-14,KH_1|PF00013.25|1.8e-14,KH_1|PF00013.25|6.7e-14,KH_3|PF13014.2|6.5e-10,KH_3|PF13014.2|5.8e-05,KH_3|PF13014.2|1.1e-09,KH_3|PF13014.2|2.2e-09,KH_3|PF13014.2|2.8e-07,KH_2|PF07650.13|0.021,KH_2|PF07650.13|0.00022,KH_2|PF07650.13|0.0018,KH_2|PF07650.13|0.0085,KH_2|PF07650.13|0.08,KH_4|PF13083.2|0.009,KH_4|PF13083.2|6.5e+03,KH_4|PF13083.2|1.6,KH_4|PF13083.2|0.00064,KH_4|PF13083.2|0.051,KH_4|PF13083.2|0.3,KH_5|PF13184.2|2.8,KH_5|PF13184.2|75,KH_5|PF13184.2|1.2,KH_5|PF13184.2|1.7,KH_5|PF13184.2|4.6 S_Transcript_47696:241-2106(+)
ATGGGTGAAACAGGCAAGCGATCCCGGCCTCAAAGAGCCAACAATGGGGAGAACAAGAATCAAAAGAGACACATTGATAAAGACGATAGGGTTGGAGACGAAGTAGTTGCATACAGGATATTGTGTCCGGACACAGTAATTGGCAGTGTGATTGGGAAAGCTGGGAAAGTGATAAACTCCATAAGGCAGGAGACTAGGGCTAAGGTTAAGGTTGTAGACCCCTTTCCTGGTGCTAAGGAGAGGGTTATCACTATCTATTGTTATGTAAAGGAGAAAGCAGAAGTTGAAGTTGATGACGAGTACAATGACAAGGAACCTCTTTGCCCTGCTCAAGATGCTCTTTTGAGGGTGCATGCTGCAATTGCGAATGCGGTGGCTACATTGGGCGAGTCAGAGAAGAAGCAGAAACAGAAGGATAAAGAGGAATGCAACATTCTTGTTCCAGCTAGTCAGTCTGCCAATGTAATTGGCAAGTCTGGGGCCACGATAAAGAAGTTGAGAGGCAAGACACGGGCTAATATTAAGGTTATAGCTAAGGATGCTTCCGATCCCACTCATTCATGTGCTATGGACTTTGACAACTTTGTTCAGATTACTGGTGATTCAGAGTCTGTAAAGAAAGCGCTGTTTGCTGTTTCTGCAATAATTTACAAATTCCCTCCTAAAGAAGAAATTCCATTGGACACTACTGTGCCTGAGGTCCCACCAAGCATCATAATTCCTGCTGATATGCCGATTTATCCTGCCAGTGGATTTTATGGTGGTGCCGACCCCATGGTTCATCCTAGGTCCGCACCCCCTCTATTGGATGGTCATGCGGCAGAACTCCCAGTTCCAGGCTATGCTGAAAGAGGGAGCATGTGGCCAGTTGTTGTCCCTAGTTATGGTGGGGTCTCTCGATCTGAGGAGTTGACTATGAGAGTGCTATGTCCATCTGATAAAATAGGTCGTCTTATTGGGAAAGGAGGGAGTACTATCAAAAGCGTCAGACAAGCTAGTGGTGCCCATATTGAGGTTGATGATGCTAAGGCTACTAAAGACAGGTGCAATGAATGTGTGATCACAGTAACTTCGACTGAGTCATTGGATGATGTGCAGTCAAGGGCAGTCGAGGCTGTTCTGTTACTTCAAGAAAAGATCAATGAAGACGCTGAAAATGTTACCTTTCGGCTTCTCATCCCATCTAGGAATATTGGGTGCATTATAGGGAAAAGTGGCTCAATTATCAACGAAATCAGGAAGAGGTCTAGGGCTGATATCCGGATCTCTAAAGGAGAGAGGCCAAAGTGTGCAGATGCTGGTGATGAATTTGTTGAGGTGTCTGGAGAAGTTAAAAATGTTAGGGATGCACTTATACAAATTGTTTTGAGGCTCCGCGATGATGCCCTAAAAGATAAAGACGGTTCTAGTAAGACTTCTATTCCTGCTGATCCTTTATATTCGGGTGGTAATGGTCTTTCAGTACCCCCTGTTTTGTCGACTGTTCCTCCAGTTGCACCTTTGGGGTATGAACAGAGAACTGAGACTGGAAGCGGCCTTGGTATGCTTTCATCAAGTGGCCTTTACAAATATGGATCTTTGTCGATGGGAGATGATGGTTACGGATCCTCCTATTCGTCAAAGTTATATGGAGGAGGATTGCTGCCATCCTCAACCGTTGAGTTATTGATACCTGCAAATGCAGTGGGTAAAGTGCTTGGAAAAAATGGATCTAATATTGCCAATATTCGTCAGATATCTGGAGCTGTTATAGAGATTTCTGAACCCAAGTCTTCTCGTGGAGATCGTTTGGCACATATATCTGGCACATCTGAGCAGAAGCGTTCAGCTGAAAACCTGATTCAAGCCTTCATTATGGCAACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_47696.p1 GENE.S_Transcript_47696~~S_Transcript_47696.p1 ORF type:complete len:622 (+),score=151.37,KH_1|PF00013.25|8.4e-12,KH_1|PF00013.25|1.2e-13,KH_1|PF00013.25|4.3e-14,KH_1|PF00013.25|1.8e-14,KH_1|PF00013.25|6.7e-14,KH_3|PF13014.2|6.5e-10,KH_3|PF13014.2|5.8e-05,KH_3|PF13014.2|1.1e-09,KH_3|PF13014.2|2.2e-09,KH_3|PF13014.2|2.8e-07,KH_2|PF07650.13|0.021,KH_2|PF07650.13|0.00022,KH_2|PF07650.13|0.0018,KH_2|PF07650.13|0.0085,KH_2|PF07650.13|0.08,KH_4|PF13083.2|0.009,KH_4|PF13083.2|6.5e+03,KH_4|PF13083.2|1.6,KH_4|PF13083.2|0.00064,KH_4|PF13083.2|0.051,KH_4|PF13083.2|0.3,KH_5|PF13184.2|2.8,KH_5|PF13184.2|75,KH_5|PF13184.2|1.2,KH_5|PF13184.2|1.7,KH_5|PF13184.2|4.6 S_Transcript_47696:241-2106(+)
MGETGKRSRPQRANNGENKNQKRHIDKDDRVGDEVVAYRILCPDTVIGSVIGKAGKVINSIRQETRAKVKVVDPFPGAKERVITIYCYVKEKAEVEVDDEYNDKEPLCPAQDALLRVHAAIANAVATLGESEKKQKQKDKEECNILVPASQSANVIGKSGATIKKLRGKTRANIKVIAKDASDPTHSCAMDFDNFVQITGDSESVKKALFAVSAIIYKFPPKEEIPLDTTVPEVPPSIIIPADMPIYPASGFYGGADPMVHPRSAPPLLDGHAAELPVPGYAERGSMWPVVVPSYGGVSRSEELTMRVLCPSDKIGRLIGKGGSTIKSVRQASGAHIEVDDAKATKDRCNECVITVTSTESLDDVQSRAVEAVLLLQEKINEDAENVTFRLLIPSRNIGCIIGKSGSIINEIRKRSRADIRISKGERPKCADAGDEFVEVSGEVKNVRDALIQIVLRLRDDALKDKDGSSKTSIPADPLYSGGNGLSVPPVLSTVPPVAPLGYEQRTETGSGLGMLSSSGLYKYGSLSMGDDGYGSSYSSKLYGGGLLPSSTVELLIPANAVGKVLGKNGSNIANIRQISGAVIEISEPKSSRGDRLAHISGTSEQKRSAENLIQAFIMAT*

Click here to download the sequence:
Link to NCBI Protein BLAST