Transcript Information: S_Transcript_47757.p1


Annotated TAIR IDAT5G25520.2
Annotated Gene NameSPOC domain / Transcription elongation factor S-II protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8885550-8889484 | Forward length=997
E-Value6.9E-162
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.492138705892
Replicate 210.417402490515
Replicate 311.736286598655
Condition 2: 8 Hour
Replicate 110.108788916563
Replicate 210.252034534346
Replicate 311.33022326313
Condition 3: 24 Hour
Replicate 112.847547433244
Replicate 210.785283245516
Replicate 311.558153929617


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_47757.p1 GENE.S_Transcript_47757~~S_Transcript_47757.p1 ORF type:complete len:1078 (+),score=233.62,TFIIS_M|PF07500.10|3.2e+02,TFIIS_M|PF07500.10|1.1e-26,SPOC|PF07744.9|3.6e-12 S_Transcript_47757:287-3520(+)
ATGTCAAACACTCTTGTTTCACAGCAGCTTGCATTGCCAACATTGCAAGAAAGTCAATCGGGCCTGAGTGATTCAGTTATGAGTGGATTAGATTCGCCCATGCAAAATTTTTCTGAAGGATCGACGGAACCCTTTAGCAGCATCCCTTTAACATTACCTTTATCAAACATGCAAGGGGACTATTGTATGTTTGGTACACCTGAAGCACAGGACACATTGATATCATATAACATGAATGGGCATTCTGAGTCCCGGTCAAATTATGTGGAGATGCAGCGGTTTGCTTTACCCAGCCGGGAAACAGGTGAACCACAAATTGTGCAGCCTGGATTGGCACAAATGAAAGTTTCATTGCCAACTAAACGAAAGGCAGCTAGTGAGCTTAGTCCTGATAACCAAGGTCCAGAAAATATGTTTGTGCCTAATCGGAAAGTGGCACAGGGGGGTTCCTTCCCAAAGGCACCTAGTACTACAAGTGCATGTATTCCAAACTCACCTAGGCTAACTGCCTCCGGCAGGAAGGTGGTGCAAGTTGAATCAGTCATGATTAAATCTCACTCTACTACTTCAAGGAAAAATGCACAGCCACAAGTGTCTCCAAAAACCCAGACAGGGGCTGATGAATCTGTGAGGGCCAAGCTGAGGGAATCATTAGCTTCTGCACTGGCCCTGGTTTCAAGACGGGAAAAATGTTCCCCAGATCAGAAGGTCATGATGGAAACTGAGTCCACAGCAGTTTCTCAGAAGGGTGTTGGGGAGCATAAACCTTTGGTTTCAGGGTCGAGCAATGAATCTCCTAACCAGGAATCTCAAAAGGATGGAGAAACCTGTACTTCCAGCATTCCACATCAAGCAGACGGGAGTAATAATGTTGGAGACAGACACCAAACGAATAAAGTTTGCGAAAAGGCCACCGAGACATGGAACTATATGGAGCCAGACTTCCAGTATAATCATGTTTTGCCTGGGGAAGATGATTCCTTTAAGGACGGATTTACTTTTAAAGATGACCTCTTGCAGGGAAATGGGCTTTCGTGGGAGTCAGATCTTTATCCAGAAATGCCAGAAATGAAGCAAGTTGAAGATACTGGAAAACCTGAACTGGTGCATGAGGGTGTGTCTCATGAAGAGAAGGAGCAAACAATTCAGTCTCCAGAATTAGTTGCCTCTCAAATTGAATCAGAGCTTTTTAAATTATTTGGTGGTGTGAATAAAAAATATAAAGAGAAGGGAAGATCTCTTTTGTTTAACTTGAAAGATCGTAATAATCCTGAGCTAAGAGAAAGAGTCATGTCTGGTGGGATACCTCCTGACCGTCTGTGTTCAATGACTGCTGAGGAGCTTGCTTCAAAGGAGCTTTCACAATGGCGAATTGCGAAAGCAGAAGAGCTTGATCAAATGAAAGTTCTTCCTGATTCAGAACTTAATATGAGACGTTTGGTTAAGAAAACTCACAAAGGTGAATACACCGTGGACTTGGAGCCGGATATTGGTACTTCGGAGGATATCCCACTAGGTACAAGTGTGACACATGAAAAGCGACCAAAGGTCAATGCTGCTGCTGCTGCAGCACCTTCTCTTAAAGCTGAGAAAACTAAGGCAGCTCAGGATAATTGTGAAATTTCTATTCCTAGTGATGGTGCTGATATGCAAGGGCTAATGGTGGACGATATGAGAGATCTTCCTCCCATTGTCTCATTGGATGAATTCATGGCGTCCCTTGATAAAGAGCCACAATTTGTGAATCTACCAGATAATTGTGGGAAAAGAACCCCTGAGTCTGATAAGGAACATCCAGAGTTGGGCTCTGAATCTAAGTCACCTGTACAACCTTCAAAGGTTTCTATGGAGGTAATATCACAGAAAATCAATGAAGTGGCAGAAGGCACAAAGCCTGGTGGCGATGTTAAATCAGCTGAAAGACAGAAGGGATTGGATACCCAAACAAAGCCTGGTGGCGATTTTAAATCAGCTGAAAGTCAGAAGGGATTGGATACCCAGATTATTCGTCTTCCAAAGGGTGAACGGGTTTGGGAAGGATTACTTCAGCTTAATATTTCTTCCGCAGCCAGTTTTGTAGCTTTCTATAAAAGTGGTGAAAAAACTAGTACCAGGGAGTGGCCAATCTTTGTTGAGATCAAGGGTCGTGTCAAGCTTGACGCTTTTGATAAGTTTGTTCAGGCACTTCCCATGTCCCGGACCCGTGCAGTGATGACATCCCATTTTGTATTGAAGGAAGAATCTACAGATACTGACCGTGCCAATCTCACTGAGATGGTTGAATCTTACATTGTGGATCAGAGGGTGGGGTTTGCTGAACCTGCCCCTGGAGTGGAGTTATATCTTTGTCCACCCCGCGTAAGAGCATTAGATGTGGTTATCAATCATCTTCCTAAGAGCTACACTGAGAAACTAAACGATATTGATAATGGCTTAATTGGAATTATTGTATGGAGAAAAGCGCAAATTACACCGTCTGCAATTTCGCCCAACTCCTCATCACATCATAAAGACATGACTAATAAGCACCCTTTTTCAACTGGGAGCAAAAACGCTGAACATAATATGAACAGGAATGTTGGTTTTGCCTCTAGACCTGCCCCCCCTCCCCATGTTCTCTCAAAACCGCAACCTGGTGATGTCGAAGATGATAATGATGATGTCCCTCCTGGATTTGGGCCCCCGGTTCCCCGGGATGATGATGACCTGCCGGAATTCAACTTTTCCAGTGGTTCAAACGCACCCATATCACGTATTTCTGACCCAAAGCACCACCTGGGTCAGGGGATGCGTTCGGGTTCTTGTCATCCTCATGCTTCATCCCGGCAGGTTGAGCAAATGAGAGAACTGGTCCTGAAATATGGGCAAAATGAAACCAAATCTGGTAGTGGAATCCCTGCACAACTGTGGCATGATGACGACGATGATGATATACCCGAATGGGAGCCTCAGGCCTCTCACAACGAGCCGCCACCTCAACTACCGCTGCCCCCTCACAATCCTGTTTTGCCGCCGCAACACAATCAACCTCCATTCCATCGCCCTCCGTGGCCACCACTGTCACAGCCTTTGCAGCCACTTCAACCACCAATGAGCATCCAGCAGCAAGCAATTTGGCGGTCTTACGGCCCTAATAGTGTAACCATTCAACCTTCTGGGCAGTTCTATCCGGCCACTGGCCACCGAGGGAGGGATTGGAGATCAAATGCTCCGAACAGCTATAGGGGTTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_47757.p1 GENE.S_Transcript_47757~~S_Transcript_47757.p1 ORF type:complete len:1078 (+),score=233.62,TFIIS_M|PF07500.10|3.2e+02,TFIIS_M|PF07500.10|1.1e-26,SPOC|PF07744.9|3.6e-12 S_Transcript_47757:287-3520(+)
MSNTLVSQQLALPTLQESQSGLSDSVMSGLDSPMQNFSEGSTEPFSSIPLTLPLSNMQGDYCMFGTPEAQDTLISYNMNGHSESRSNYVEMQRFALPSRETGEPQIVQPGLAQMKVSLPTKRKAASELSPDNQGPENMFVPNRKVAQGGSFPKAPSTTSACIPNSPRLTASGRKVVQVESVMIKSHSTTSRKNAQPQVSPKTQTGADESVRAKLRESLASALALVSRREKCSPDQKVMMETESTAVSQKGVGEHKPLVSGSSNESPNQESQKDGETCTSSIPHQADGSNNVGDRHQTNKVCEKATETWNYMEPDFQYNHVLPGEDDSFKDGFTFKDDLLQGNGLSWESDLYPEMPEMKQVEDTGKPELVHEGVSHEEKEQTIQSPELVASQIESELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGGIPPDRLCSMTAEELASKELSQWRIAKAEELDQMKVLPDSELNMRRLVKKTHKGEYTVDLEPDIGTSEDIPLGTSVTHEKRPKVNAAAAAAPSLKAEKTKAAQDNCEISIPSDGADMQGLMVDDMRDLPPIVSLDEFMASLDKEPQFVNLPDNCGKRTPESDKEHPELGSESKSPVQPSKVSMEVISQKINEVAEGTKPGGDVKSAERQKGLDTQTKPGGDFKSAESQKGLDTQIIRLPKGERVWEGLLQLNISSAASFVAFYKSGEKTSTREWPIFVEIKGRVKLDAFDKFVQALPMSRTRAVMTSHFVLKEESTDTDRANLTEMVESYIVDQRVGFAEPAPGVELYLCPPRVRALDVVINHLPKSYTEKLNDIDNGLIGIIVWRKAQITPSAISPNSSSHHKDMTNKHPFSTGSKNAEHNMNRNVGFASRPAPPPHVLSKPQPGDVEDDNDDVPPGFGPPVPRDDDDLPEFNFSSGSNAPISRISDPKHHLGQGMRSGSCHPHASSRQVEQMRELVLKYGQNETKSGSGIPAQLWHDDDDDDIPEWEPQASHNEPPPQLPLPPHNPVLPPQHNQPPFHRPPWPPLSQPLQPLQPPMSIQQQAIWRSYGPNSVTIQPSGQFYPATGHRGRDWRSNAPNSYRGY*

Click here to download the sequence:
Link to NCBI Protein BLAST