Transcript Information: S_Transcript_477605.p1


Annotated TAIR IDAT5G52290.1
Annotated Gene Nameshortage in chiasmata 1
Annotated Gene Symbol(s)SHOC1
Annotation TypeHomolog
Chromosome Positionchr5:21230353-21236554 | Reverse length=1594
E-Value2E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.10157634059229
Replicate 20
Replicate 30.070392122456491
Condition 2: 8 Hour
Replicate 10.081394619531042
Replicate 20.17077747053226
Replicate 30.081358196965578
Condition 3: 24 Hour
Replicate 10.083377417903031
Replicate 20.086503097619647
Replicate 30.48133672528847


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_477605.p1 GENE.S_Transcript_477605~~S_Transcript_477605.p1 ORF type:3prime_partial len:262 (+),score=46.82 S_Transcript_477605:182-964(+)
ATGATCATACCTTTCAATTGTGAGAAAAGGAAAGAGTTGGTAATGCTCAATATAGGTCTTGCAAATCCATACCATGATGATATTAAAGCAACTGTAGAGACGATCAAGCCTCTTTTTCTAGAGTTTGATATGGAACAGCAGGCTGAAATACCAGAAATTCTTCCTGTGCTGAACAATATTAATTCTTGTGAAAACGCATATCCCTTTTTTGAAGTGGATGAGATTGGGGTGGAAGATTGTAGTTGGGATTGCTTGGAAAATCAACTCCATTCCCTCATTGAGAACATTGAAGTGCATTATATGGGCACTGTGGACTTTGAACTTAACTGTCAACATCTACTGGGATCTATGGGAATTAACATCTTGGAGCTTATTGATGGTCAATATAAGTTGGAGCTGCCCCTTCAATTTCATCTGGAAAATACAAATTTGATTCTAGATATTGATATCTTACAAGTGATGGAGACTTCTTTTACAGAGAGAGACCCTGGGACTGCGGATACTTGTATGATTCCTGTTTCTGAGATATTTCTATTTGAAGATTGTGAAATGCTTGATTCAAATCCCTTTAAGATTTTTGAAGTACAGTCCATTTGTCAGACACCACAAGAACTAGAGATGTGTGATAAATTATGCCACAGAGATATGAACTTCAAAACTTTTGATGAGCTAATCGTCAGTAGTGAACTAGCAATTATTGATGGCACTTTCGTATCACTTCCTGTGCCGGTTATTTTGGATGATGAAAAAATCATGCCATTACATGTGCTTATTGCTGATCTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_477605.p1 GENE.S_Transcript_477605~~S_Transcript_477605.p1 ORF type:3prime_partial len:262 (+),score=46.82 S_Transcript_477605:182-964(+)
MIIPFNCEKRKELVMLNIGLANPYHDDIKATVETIKPLFLEFDMEQQAEIPEILPVLNNINSCENAYPFFEVDEIGVEDCSWDCLENQLHSLIENIEVHYMGTVDFELNCQHLLGSMGINILELIDGQYKLELPLQFHLENTNLILDIDILQVMETSFTERDPGTADTCMIPVSEIFLFEDCEMLDSNPFKIFEVQSICQTPQELEMCDKLCHRDMNFKTFDELIVSSELAIIDGTFVSLPVPVILDDEKIMPLHVLIADL

Click here to download the sequence:
Link to NCBI Protein BLAST