Transcript Information: S_Transcript_477607.p1


Annotated TAIR IDAT5G07960.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2542350-2543253 | Forward length=107
E-Value1.4E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 148.997768629258
Replicate 237.939750267128
Replicate 341.022160634551
Condition 2: 8 Hour
Replicate 154.409640715676
Replicate 251.434343601615
Replicate 348.608101080518
Condition 3: 24 Hour
Replicate 144.506398139715
Replicate 243.844943890691
Replicate 342.429607410476


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_477607.p1 GENE.S_Transcript_477607~~S_Transcript_477607.p1 ORF type:complete len:107 (+),score=5.95,UPF0139|PF03669.9|4.6e-32 S_Transcript_477607:174-494(+)
ATGTCGTCGCAACCATCATCGGGAAGCGATCCAAGGCAACCAGCAGCAGCAAGGCCATACAAAGCACCTCTTGTAGCTCCTCAAGACCTTCCTGTCGATTACTCCGGCTTCATCGCCGTCCTTTGCGGTGTTCTCGGCGTCATGTTCCGATACAAGCTCGGATCATGGCTAGCTATAATATTTTGTGCGCAGTCGCTTGCAAACATGAGAAATATGGAGAATGATCTTAAGCAGATATCTATGGCCATGATGTTTGCTGTAATGGGATTAGTGACAAACTACATGGGACAACGACCTCCAGCTTCGAGCGCACAAACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_477607.p1 GENE.S_Transcript_477607~~S_Transcript_477607.p1 ORF type:complete len:107 (+),score=5.95,UPF0139|PF03669.9|4.6e-32 S_Transcript_477607:174-494(+)
MSSQPSSGSDPRQPAAARPYKAPLVAPQDLPVDYSGFIAVLCGVLGVMFRYKLGSWLAIIFCAQSLANMRNMENDLKQISMAMMFAVMGLVTNYMGQRPPASSAQT*

Click here to download the sequence:
Link to NCBI Protein BLAST