Transcript Information: S_Transcript_477609.p1


Annotated TAIR IDAT5G07960.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2542350-2543253 | Forward length=107
E-Value1.9E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.748081626341
Replicate 28.7456102750509
Replicate 39.969046531676
Condition 2: 8 Hour
Replicate 115.561771312503
Replicate 216.930047619253
Replicate 312.674287765124
Condition 3: 24 Hour
Replicate 112.792048890889
Replicate 214.700850752225
Replicate 313.406311891008


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_477609.p1 GENE.S_Transcript_477609~~S_Transcript_477609.p1 ORF type:5prime_partial len:111 (+),score=4.25 S_Transcript_477609:1-333(+)
CGGCGGAATTCAGTTTTAATTTCGCTCGAGTTTAGAATTCAGTTGAGTACTTTGGTTTGGAGTTTAGAACCAAAGTATCAGAAGAAACTGCAAATCTCTCTGAGAGTTAGACAGAGAGAGAGAGAGAGCAACAATGTCGTCGCAACCATCATCGGGAAGCGATCCAAGGCAACCAGCAGCAGCAAGGCCATACAAAGCACCTCTTGTAGCTCCTCAAGACCTTCCTGTCGATTACTCCGGCTTCATCGCCGTCCTTTGCGGTGTTCTCGGCGTCATGTTCCGAGTAATTTCCTTTTTTTTTTTACCTTAATTTTGCATCGATCTTCTTTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_477609.p1 GENE.S_Transcript_477609~~S_Transcript_477609.p1 ORF type:5prime_partial len:111 (+),score=4.25 S_Transcript_477609:1-333(+)
RRNSVLISLEFRIQLSTLVWSLEPKYQKKLQISLRVRQRERESNNVVATIIGKRSKATSSSKAIQSTSCSSSRPSCRLLRLHRRPLRCSRRHVPSNFLFFFTLILHRSSL*

Click here to download the sequence:
Link to NCBI Protein BLAST