Transcript Information: S_Transcript_47872.p1


Annotated TAIR IDAT5G05250.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:1557116-1557835 | Reverse length=239
E-Value2E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.4211669182775
Replicate 24.6304620058982
Replicate 32.959945297368
Condition 2: 8 Hour
Replicate 17.5033780745468
Replicate 26.7667937243617
Replicate 33.6842205737005
Condition 3: 24 Hour
Replicate 19.0346123078383
Replicate 28.3940042875361
Replicate 35.1378238603014


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_47872.p1 GENE.S_Transcript_47872~~S_Transcript_47872.p1 ORF type:internal len:162 (-),score=50.68 S_Transcript_47872:1-483(-)
TCACCAGAAGGGATAATTCTTGTGGAGGAACTCAAGGATCAGTTGGAGGAGGATGAGGATGGGATTTTTGAAGAAGGTAAGGGGCAGAAGTTTGACCGTTGGATGAAGGAATCAGTGGTTGAGATCGTCAAGAATCTTCGAGAAGCGCCTCTATTCGTCCACGTGTACGGTGGTGGGCCCGAGACTAGGCTTAAGACTGAGAGAGCGGTTGCAGAGGATTGGGCCCAGTTGAAGGGTAAATGGGTAAAAGGGGAAGAGCCTTCACCAGAAGGGATAATTCTTGTGGAGGAACTCAAGGATCAGTTGGAGGAGGATGAGGATGGGATTTTTGAAGAAGGTAAGGGGCAAAATGGGGAATGCACTAAGAATTGGGGGGTGTTGATACAAGGAAAGGGTGATGATGGTGAGGTGGCTTGTTATTTGTTGAAGACAAGCAAGGCTGGGGGAAGTAATTTGGGGTTGTTTTGTACACATTATTGTTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_47872.p1 GENE.S_Transcript_47872~~S_Transcript_47872.p1 ORF type:internal len:162 (-),score=50.68 S_Transcript_47872:1-483(-)
SPEGIILVEELKDQLEEDEDGIFEEGKGQKFDRWMKESVVEIVKNLREAPLFVHVYGGGPETRLKTERAVAEDWAQLKGKWVKGEEPSPEGIILVEELKDQLEEDEDGIFEEGKGQNGECTKNWGVLIQGKGDDGEVACYLLKTSKAGGSNLGLFCTHYCL

Click here to download the sequence:
Link to NCBI Protein BLAST