Transcript Information: S_Transcript_478821.p1


Annotated TAIR IDAT2G19070.1
Annotated Gene Namespermidine hydroxycinnamoyl transferase
Annotated Gene Symbol(s)SHT
Annotation TypeHomolog
Chromosome Positionchr2:8260185-8261958 | Reverse length=451
E-Value8E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1880804122848
Replicate 21.3789243473447
Replicate 31.152671005225
Condition 2: 8 Hour
Replicate 10.95202635344344
Replicate 22.1972351342589
Replicate 30.76128027160648
Condition 3: 24 Hour
Replicate 10.78017441037836
Replicate 21.4164882235217
Replicate 30.67559047513704


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_478821.p1 GENE.S_Transcript_478821~~S_Transcript_478821.p1 ORF type:5prime_partial len:112 (+),score=23.83,Transferase|PF02458.11|9.3e-11 S_Transcript_478821:3-338(+)
GCAATAGAGATGGTGAATAATGAGTATGTATGGTCAATGATTGAGTACCTTAAGAGTCAAGAAAGCTTGTGCCCATTTCAAGATCTTCAAGGCTTTTCCTTGGAAAACCCTAATGTTGAAATTATAAGTTGGTTAAATTTATCAGCTCGAAACAAAGACTTTGGTTGGGGAAAGGAGATCTACTTTGGATTGGGAAAACATCTCTGGGATGCTGAGTTCTTGATTTTGCCTGGGTTCGATGATGCCGATGGTTCAATATTGGTTGATGCATGCTTGCAAGCTCATCATATGGATGAATTCAAGAATTATTTTTATGAGGATATATTCAATATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_478821.p1 GENE.S_Transcript_478821~~S_Transcript_478821.p1 ORF type:5prime_partial len:112 (+),score=23.83,Transferase|PF02458.11|9.3e-11 S_Transcript_478821:3-338(+)
AIEMVNNEYVWSMIEYLKSQESLCPFQDLQGFSLENPNVEIISWLNLSARNKDFGWGKEIYFGLGKHLWDAEFLILPGFDDADGSILVDACLQAHHMDEFKNYFYEDIFNI*

Click here to download the sequence:
Link to NCBI Protein BLAST