Transcript Information: S_Transcript_479045.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.52699012346892
Replicate 20.32766519144824
Replicate 30.36520269472476
Condition 2: 8 Hour
Replicate 10.10557123919373
Replicate 20.33225517781772
Replicate 30.21104799608892
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.12486160596592


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_479045.p1 GENE.S_Transcript_479045~~S_Transcript_479045.p1 ORF type:5prime_partial len:202 (+),score=24.18,DDE_Tnp_4|PF13359.2|4.9e-29,DDE_Tnp_1|PF01609.17|5.3e-06,Plant_tran|PF04827.10|8.8e-06 S_Transcript_479045:1-606(+)
CCTACATTTAATGTAATGGCTGTGTGTGATTTTGATATGTGTTTTACTTTTATTTCGGCCGGTTGGGAAGGATCAGCACATGATACACGTGTATTTATTCATGCAACTACTACACCATCAATGAACTTTCCTCAACCTTCACAAGGTAAATATTATTTGGTGGACAAAGGATATCCCGAAAGAAAAGGATACTTGGTACCATATCCAAAGATAAGATATCATCAATCTCAATTTGAAAATGTGGCACCAAGAAATGCTAGAGAAGCCTTCAACCGTAGTCACTCTTCACTTCGGAGTTGTATCGAAAGGTCATTTGGAGTTTTGAAGAAAAGATGGAGGATTTTACAGAGAATGCCCAAATTTAGTGTTCAAACCCAAATTGACATCATACTTGCTACATTTGCCTTGCATAATTATATCCGCAAAAATTCCGAAGATGATCTGATTTTTACTTCTCTTCAGCAGCATCCAAATTACATACCGCATGAAGAATATGACCAATTGGATGACAACGACAATAATGATGGAAACTCCAATAGACCATCTATTGAGATGAGACAAGTGCGTGATGAAATAGCTACTTTGATATGGAATGCAAAAAACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_479045.p1 GENE.S_Transcript_479045~~S_Transcript_479045.p1 ORF type:5prime_partial len:202 (+),score=24.18,DDE_Tnp_4|PF13359.2|4.9e-29,DDE_Tnp_1|PF01609.17|5.3e-06,Plant_tran|PF04827.10|8.8e-06 S_Transcript_479045:1-606(+)
PTFNVMAVCDFDMCFTFISAGWEGSAHDTRVFIHATTTPSMNFPQPSQGKYYLVDKGYPERKGYLVPYPKIRYHQSQFENVAPRNAREAFNRSHSSLRSCIERSFGVLKKRWRILQRMPKFSVQTQIDIILATFALHNYIRKNSEDDLIFTSLQQHPNYIPHEEYDQLDDNDNNDGNSNRPSIEMRQVRDEIATLIWNAKN*

Click here to download the sequence:
Link to NCBI Protein BLAST