Transcript Information: S_Transcript_47926.p1


Annotated TAIR IDAT5G26742.2
Annotated Gene NameDEAD box RNA helicase (RH3)
Annotated Gene Symbol(s)emb1138
Annotation TypeOrtholog
Chromosome Positionchr5:9285540-9288871 | Reverse length=748
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1242.82189362295
Replicate 2273.37670877867
Replicate 3291.58809533483
Condition 2: 8 Hour
Replicate 1517.74702530733
Replicate 2530.08121365188
Replicate 3456.07554718737
Condition 3: 24 Hour
Replicate 1271.81888359081
Replicate 2275.07645815214
Replicate 3272.16728962645


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_47926.p1 GENE.S_Transcript_47926~~S_Transcript_47926.p1 ORF type:complete len:765 (+),score=208.31,DEAD|PF00270.25|5.1e-48,Helicase_C|PF00271.27|4.7e+02,Helicase_C|PF00271.27|5e-30,GUCT|PF08152.8|3.4e-19,zf-CCHC|PF00098.19|9.1e-07,ResIII|PF04851.11|4e-06 S_Transcript_47926:243-2537(+)
ATGTCATCTTCTATAATTGGGGTTTCATCCATATACCAGTCACCTGCCCTTCCAAAAATACCCAGAAAATACCCAGTTCCTCCATCTCTACTTTCTCTTCCATTCTTCTCAGAGAAAACCCGCTTAAACTCACTTAAAGTTAGAAACTTGAAGTGGGTTTCTTCTGCTATTGCTACACCTAACTCTGTGTTGAGTGAGGAGGCTTTTAAGGGCCTTTCTGAGGACTTCTCTAAGGGCTCGTTTGGTGTTAGTGATGAGGAATTTGATGAGGAGTTTGATGAAGATGAGTTTGAGAGTGAGGGTGATGGTGAAAATATTCAAGGGGACTCTGTGGTTAGTAAAGATGAGCTTGATGTTGAAAGGTTGGGACTTCCTCAGAAACTTGCTGCTGCTCTTACCAAACGGGGCATTACCCAGCTTTTCCCCATTCAGCGAGCTGTACTGGTTCCTGCTTTGGAAGGCCGAGATATCATTGCTCGAGCAAAGACAGGGACTGGAAAAACTTTAGCTTTTGGGATTCCCATACTCAAGCGAATTACAGAAGCAGATGAAGAGAGAAGTCCTCGAAGGCGGTCAGGACGGCTTCCAAGAGTATTAGTCCTAGCTCCTACTAGAGAGTTGGCAAAACAAGTGGAGAAAGAAATGAAGGAGTCTGCACCATACTTGAACACCGTTTGTGTGTATGGAGGTGTTTCTTACACTGCACAACAAGGTGCACTTTCTCGTGGAGTTGATGTGGTGGTAGGAACTCCTGGTAGACTTATTGACCTGGTCAATAGTAACAGCCTCAAATTGAGTGAGGTTGAATTTTTGGTCCTTGATGAAGCAGACCAAATGCTTGCAGTTGGATTTGAGGAAGATGTGGAAGTGATCTTGGAAAAACTTCCATCCGAGAGGCAGAGCATGCTTTTCTCGGCTACTATGCCTGGTTGGGTAAAGAAATTAGCTAGGAAATATTTGGACAATCCCCTCACGATTGATTTGGTTGGTGATCAGGACGAGAAGTTAGCGGAAGGGATTAAATTATTTGCAGTTTCAACTACCGCTAATTCAAAACGCACTATTCTTAGTGACATTATCACGGTGTATGCAAAGGGTGGGAAAACCATAGTTTTCACGCAGACAAAACGTGATGCTGATGAAGTCTCTTTAGCATTAACAAACAGCATTACTTCAGAGGCATTGCATGGAGATATATCCCAACACCAGAGGGAGAGGACACTAAATGGTTTCCGACAAGGGAAATTCTCTGTGCTTGTTGCCACAGATGTTGCTTCTCGTGGTCTTGATATACCTAATGTTGACCTGGTTATTCATTATGAGCTACCAAATGATCCAGAGACTTTTGTGCATCGTTCTGGTCGTACAGGGCGTGCAGGGAAGGCAGGCACTGCTGTCTTAATGTTCTCTAGCAACCAGAGAAGAACAGTTCGATCCCTTGAAAGAGATGTCGGTTGCAAGTTTGAGTACTCAAGTCCCCCGACAGTTGAAGAGGTCTTGGAGGCATCTGCTGATCAAGTTGTTGCTACTCTTGGTGGGGTTCATCCCGAGTCCATTGCATTCTTTACTCCAACTGCCCAGAGATTATTTGAAGAGAAGGGAACAGAAGCTCTTGCAGCTGCATTAGCACAAATGAGTGGTTTCTCTCAGCCACCATCATCAAGATCTCTTCTTAGTCATGAACAGGGTTGGGTAACGGTGCAATTAACTCGTGCTCCTGGTTATTCAAGAGGATTCTTGTCTGCTAGATCTGTTATGGGATTCCTTTCTGACGTTTATCCTACAGCAGCGGATGAAGTTGGAAAAATACAATTGATTGCAGATGAGAGGGTCCAAGGTGCTGTGTTTGATCTTCCTGAAGAAATTGCGAAGGAGCTATTAAGCAAAGAAATACCAGAAGGAAACGCTCTGTCCAGGATCACTAAGTTGCCTGCTCTGCAAGATGATGCTCCTCCAAGTGACATGTATGGTAGATTTTCTGGTAGGGATAGAGGTTCCCGTGGAGGTTCAAGGGACAGAAGAGGAGCACGAACTTCCCGTGGTTGGGGTAGGGGTCAGGGCTCTGATTTCGATGATGATGATGACGTATTTAGGCGTGGTGGTCGAAGCCCTAGATCAGGCAGTAGGTGGTCCTCTAACTCAAGAAGCAGTGGCGATGATTGGCTGATCAGTGGTAGACGATCAAATAGGTCATCATCATTAGGAAGCAGGGACAGGAATTTTGGTGGTGCATGCTTCAACTGTGGAAGAACTGGGCATAGGGCATCAGAATGCCCAAGCAAGCAATCTTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_47926.p1 GENE.S_Transcript_47926~~S_Transcript_47926.p1 ORF type:complete len:765 (+),score=208.31,DEAD|PF00270.25|5.1e-48,Helicase_C|PF00271.27|4.7e+02,Helicase_C|PF00271.27|5e-30,GUCT|PF08152.8|3.4e-19,zf-CCHC|PF00098.19|9.1e-07,ResIII|PF04851.11|4e-06 S_Transcript_47926:243-2537(+)
MSSSIIGVSSIYQSPALPKIPRKYPVPPSLLSLPFFSEKTRLNSLKVRNLKWVSSAIATPNSVLSEEAFKGLSEDFSKGSFGVSDEEFDEEFDEDEFESEGDGENIQGDSVVSKDELDVERLGLPQKLAAALTKRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILKRITEADEERSPRRRSGRLPRVLVLAPTRELAKQVEKEMKESAPYLNTVCVYGGVSYTAQQGALSRGVDVVVGTPGRLIDLVNSNSLKLSEVEFLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLFAVSTTANSKRTILSDIITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKAGTAVLMFSSNQRRTVRSLERDVGCKFEYSSPPTVEEVLEASADQVVATLGGVHPESIAFFTPTAQRLFEEKGTEALAAALAQMSGFSQPPSSRSLLSHEQGWVTVQLTRAPGYSRGFLSARSVMGFLSDVYPTAADEVGKIQLIADERVQGAVFDLPEEIAKELLSKEIPEGNALSRITKLPALQDDAPPSDMYGRFSGRDRGSRGGSRDRRGARTSRGWGRGQGSDFDDDDDVFRRGGRSPRSGSRWSSNSRSSGDDWLISGRRSNRSSSLGSRDRNFGGACFNCGRTGHRASECPSKQSF*

Click here to download the sequence:
Link to NCBI Protein BLAST