Transcript Information: S_Transcript_479759.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value6E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.37714170183786
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.36437346333302
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.21557302910356


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_479759.p1 GENE.S_Transcript_479759~~S_Transcript_479759.p1 ORF type:3prime_partial len:117 (+),score=22.28,gag_pre-integrs|PF13976.2|1.6e-16 S_Transcript_479759:51-398(+)
ATGGAATTGGTTTCCAAGGTTGATATGACACGGAATCATCTCTTCACTATCGACATTGAATCTGGAGAAGCGAAGTGCATGAAGACATCCATCAAAGACGATTCATGGCTTTGGCATTTGAGGTATGGTCATCTTGGATTTTCTGGCCTAAAGCTGTTGGCTAAAGAAAATATGGTGAACGGACTGCCAAAAATAAATCCACTTGATCAATTATGCGAAGCCTGCATCAAAGGGAAACAACACGGGCAAAATTTTGAATTTGGCAAGTCTAGAAGAGCTAGAAGACCACTAGAGATTGTGCACTCAGATCTAGCTGGTCCATTTGACATACCATCACTTGGAGGAAAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_479759.p1 GENE.S_Transcript_479759~~S_Transcript_479759.p1 ORF type:3prime_partial len:117 (+),score=22.28,gag_pre-integrs|PF13976.2|1.6e-16 S_Transcript_479759:51-398(+)
MELVSKVDMTRNHLFTIDIESGEAKCMKTSIKDDSWLWHLRYGHLGFSGLKLLAKENMVNGLPKINPLDQLCEACIKGKQHGQNFEFGKSRRARRPLEIVHSDLAGPFDIPSLGGN

Click here to download the sequence:
Link to NCBI Protein BLAST